WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0416.1a.1 Sequence Name  B0416.1a.1
Length (nt)  3980   Chromosome Location  X: 9303724-9310443
Chromosome . Primary Identifier  X Chromosome Location . Start  9303724
Chromosome Location . End  9310443 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0416.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015177 tmc-2 B0416.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0416.1a B0416.1a 3717   X: 9303782-9303922

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0416.1a.1 9303724 9310443 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon244121   199   X: 9303724-9303922 Caenorhabditis elegans
Exon244122   83   X: 9304225-9304307 Caenorhabditis elegans
Exon244124   141   X: 9304367-9304507 Caenorhabditis elegans
Exon244126   265   X: 9304558-9304822 Caenorhabditis elegans
Exon244128   123   X: 9305107-9305229 Caenorhabditis elegans
Exon244130   146   X: 9305282-9305427 Caenorhabditis elegans
Exon244132   98   X: 9305494-9305591 Caenorhabditis elegans
Exon244136   215   X: 9305640-9305854 Caenorhabditis elegans
Exon244140   116   X: 9305899-9306014 Caenorhabditis elegans
Exon244144   138   X: 9306069-9306206 Caenorhabditis elegans
Exon244148   270   X: 9306354-9306623 Caenorhabditis elegans
Exon244152   196   X: 9306669-9306864 Caenorhabditis elegans
Exon244156   58   X: 9307248-9307305 Caenorhabditis elegans
Exon244160   250   X: 9307354-9307603 Caenorhabditis elegans
Exon244164   126   X: 9307751-9307876 Caenorhabditis elegans
Exon244168   79   X: 9307924-9308002 Caenorhabditis elegans
Exon244172   440   X: 9308098-9308537 Caenorhabditis elegans
Exon244176   105   X: 9308660-9308764 Caenorhabditis elegans
Exon244180   117   X: 9308817-9308933 Caenorhabditis elegans
Exon244184   57   X: 9309009-9309065 Caenorhabditis elegans
Exon244186   111   X: 9309117-9309227 Caenorhabditis elegans
Exon244190   117   X: 9309569-9309685 Caenorhabditis elegans
Exon244194   93   X: 9309736-9309828 Caenorhabditis elegans
Exon244198   85   X: 9309907-9309991 Caenorhabditis elegans
Exon244202   66   X: 9310040-9310105 Caenorhabditis elegans
Exon244209   286   X: 9310158-9310443 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0416.1a.1 9303724 9310443 1

1 Sequence

Length
3980

1 Sequence Ontology Term

Identifier Name Description
transcript