WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:B0416.1a Sequence Name  B0416.1a
Length (nt)  3717   Chromosome Location  X: 9303782-9303922
Chromosome . Primary Identifier  X Chromosome Location . Start  9303782
Chromosome Location . End  9303922
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0416.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE51844 TMC-2, isoform a 140.1 1238 Caenorhabditis elegans
 

Other

3 RNAi

WormBase ID
WBRNAi00039044
WBRNAi00009765
WBRNAi00028136

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:B0416.1a 9303782 9303922 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015177 tmc-2 B0416.1 Caenorhabditis elegans

26 Locations


Feature . Primary Identifier
Start End Strand
CDS:B0416.1a 9303782 9303922 1
CDS:B0416.1a 9304225 9304307 1
CDS:B0416.1a 9304367 9304507 1
CDS:B0416.1a 9304558 9304822 1
CDS:B0416.1a 9305107 9305229 1
CDS:B0416.1a 9305282 9305427 1
CDS:B0416.1a 9305494 9305591 1
CDS:B0416.1a 9305640 9305854 1
CDS:B0416.1a 9305899 9306014 1
CDS:B0416.1a 9306069 9306206 1
CDS:B0416.1a 9306354 9306623 1
CDS:B0416.1a 9306669 9306864 1
CDS:B0416.1a 9307248 9307305 1
CDS:B0416.1a 9307354 9307603 1
CDS:B0416.1a 9307751 9307876 1
CDS:B0416.1a 9307924 9308002 1
CDS:B0416.1a 9308098 9308537 1
CDS:B0416.1a 9308660 9308764 1
CDS:B0416.1a 9308817 9308933 1
CDS:B0416.1a 9309009 9309065 1
CDS:B0416.1a 9309117 9309227 1
CDS:B0416.1a 9309569 9309685 1
CDS:B0416.1a 9309736 9309828 1
CDS:B0416.1a 9309907 9309991 1
CDS:B0416.1a 9310040 9310105 1
CDS:B0416.1a 9310158 9310238 1

1 Sequence

Length
3717

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:B0416.1a.1 B0416.1a.1 3980   X: 9303724-9310443