WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T20B5.3a.1 Sequence Name  T20B5.3a.1
Length (nt)  3026   Chromosome Location  X: 9343333-9347428
Chromosome . Primary Identifier  X Chromosome Location . Start  9343333
Chromosome Location . End  9347428 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T20B5.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020596 oga-1 T20B5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T20B5.3a T20B5.3a 2565   X: 9343744-9343907

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T20B5.3a.1 9343333 9347428 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon244242   575   X: 9343333-9343907 Caenorhabditis elegans
Exon244244   322   X: 9343985-9344306 Caenorhabditis elegans
Exon244247   265   X: 9344366-9344630 Caenorhabditis elegans
Exon244248   297   X: 9344688-9344984 Caenorhabditis elegans
Exon244250   254   X: 9345066-9345319 Caenorhabditis elegans
Exon244252   223   X: 9345371-9345593 Caenorhabditis elegans
Exon244254   148   X: 9345713-9345860 Caenorhabditis elegans
Exon244256   270   X: 9345909-9346178 Caenorhabditis elegans
Exon244257   163   X: 9346223-9346385 Caenorhabditis elegans
Exon244259   236   X: 9346429-9346664 Caenorhabditis elegans
Exon244261   150   X: 9346996-9347145 Caenorhabditis elegans
Exon244263   56   X: 9347255-9347310 Caenorhabditis elegans
Exon244265   67   X: 9347362-9347428 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T20B5.3a.1 9343333 9347428 -1

1 Sequence

Length
3026

1 Sequence Ontology Term

Identifier Name Description
transcript