WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F11A1.3d.1 Sequence Name  F11A1.3d.1
Length (nt)  2160   Chromosome Location  X: 10659692-10665481
Chromosome . Primary Identifier  X Chromosome Location . Start  10659692
Chromosome Location . End  10665481 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F11A1.3d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000908 daf-12 F11A1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F11A1.3d F11A1.3d 2160   X: 10659692-10659760

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F11A1.3d.1 10659692 10665481 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon249690   69   X: 10659692-10659760 Caenorhabditis elegans
Exon249692   73   X: 10660796-10660868 Caenorhabditis elegans
Exon249703   83   X: 10661303-10661385 Caenorhabditis elegans
Exon249712   123   X: 10661433-10661555 Caenorhabditis elegans
Exon249721   267   X: 10661601-10661867 Caenorhabditis elegans
Exon249730   48   X: 10661934-10661981 Caenorhabditis elegans
Exon249739   72   X: 10662030-10662101 Caenorhabditis elegans
Exon249748   96   X: 10662795-10662890 Caenorhabditis elegans
Exon249757   75   X: 10663250-10663324 Caenorhabditis elegans
Exon249766   98   X: 10663660-10663757 Caenorhabditis elegans
Exon249781   352   X: 10663807-10664158 Caenorhabditis elegans
Exon249790   180   X: 10664406-10664585 Caenorhabditis elegans
Exon249801   293   X: 10664630-10664922 Caenorhabditis elegans
Exon249811   162   X: 10664970-10665131 Caenorhabditis elegans
Exon249821   76   X: 10665178-10665253 Caenorhabditis elegans
Exon249829   93   X: 10665389-10665481 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F11A1.3d.1 10659692 10665481 1

1 Sequence

Length
2160

1 Sequence Ontology Term

Identifier Name Description
transcript