WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F08B12.3d.1 Sequence Name  F08B12.3d.1
Length (nt)  3442   Chromosome Location  X: 11394608-11401307
Chromosome . Primary Identifier  X Chromosome Location . Start  11394608
Chromosome Location . End  11401307 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F08B12.3d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004831 slo-2 F08B12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F08B12.3d F08B12.3d 3351   X: 11394699-11394846

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F08B12.3d.1 11394608 11401307 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252706   239   X: 11394608-11394846 Caenorhabditis elegans
Exon252715   88   X: 11394909-11394996 Caenorhabditis elegans
Exon252721   36   X: 11395185-11395220 Caenorhabditis elegans
Exon252725   124   X: 11395267-11395390 Caenorhabditis elegans
Exon252733   123   X: 11395446-11395568 Caenorhabditis elegans
Exon252741   84   X: 11395617-11395700 Caenorhabditis elegans
Exon252749   343   X: 11395744-11396086 Caenorhabditis elegans
Exon252757   801   X: 11396349-11397149 Caenorhabditis elegans
Exon252765   150   X: 11397194-11397343 Caenorhabditis elegans
Exon252773   109   X: 11397394-11397502 Caenorhabditis elegans
Exon252781   179   X: 11397623-11397801 Caenorhabditis elegans
Exon252789   131   X: 11397848-11397978 Caenorhabditis elegans
Exon252797   441   X: 11398024-11398464 Caenorhabditis elegans
Exon252805   84   X: 11398512-11398595 Caenorhabditis elegans
Exon252813   75   X: 11398646-11398720 Caenorhabditis elegans
Exon252821   109   X: 11398770-11398878 Caenorhabditis elegans
Exon252829   145   X: 11399264-11399408 Caenorhabditis elegans
Exon252837   77   X: 11399466-11399542 Caenorhabditis elegans
Exon252844   104   X: 11401204-11401307 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F08B12.3d.1 11394608 11401307 -1

1 Sequence

Length
3442

1 Sequence Ontology Term

Identifier Name Description
transcript