WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F08B12.3c.1 Sequence Name  F08B12.3c.1
Length (nt)  3402   Chromosome Location  X: 11394609-11401561
Chromosome . Primary Identifier  X Chromosome Location . Start  11394609
Chromosome Location . End  11401561 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F08B12.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004831 slo-2 F08B12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F08B12.3c F08B12.3c 3261   X: 11394699-11394846

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F08B12.3c.1 11394609 11401561 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252707   238   X: 11394609-11394846 Caenorhabditis elegans
Exon252714   88   X: 11394909-11394996 Caenorhabditis elegans
Exon252724   124   X: 11395267-11395390 Caenorhabditis elegans
Exon252732   123   X: 11395446-11395568 Caenorhabditis elegans
Exon252740   84   X: 11395617-11395700 Caenorhabditis elegans
Exon252748   343   X: 11395744-11396086 Caenorhabditis elegans
Exon252756   801   X: 11396349-11397149 Caenorhabditis elegans
Exon252764   150   X: 11397194-11397343 Caenorhabditis elegans
Exon252772   109   X: 11397394-11397502 Caenorhabditis elegans
Exon252780   179   X: 11397623-11397801 Caenorhabditis elegans
Exon252788   131   X: 11397848-11397978 Caenorhabditis elegans
Exon252796   441   X: 11398024-11398464 Caenorhabditis elegans
Exon252804   84   X: 11398512-11398595 Caenorhabditis elegans
Exon252812   75   X: 11398646-11398720 Caenorhabditis elegans
Exon252820   109   X: 11398770-11398878 Caenorhabditis elegans
Exon252828   145   X: 11399264-11399408 Caenorhabditis elegans
Exon252836   77   X: 11399466-11399542 Caenorhabditis elegans
Exon252845   101   X: 11401461-11401561 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F08B12.3c.1 11394609 11401561 -1

1 Sequence

Length
3402

1 Sequence Ontology Term

Identifier Name Description
transcript