WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F15A2.2.1 Sequence Name  F15A2.2.1
Length (nt)  1980   Chromosome Location  X: 13472155-13475926
Chromosome . Primary Identifier  X Chromosome Location . Start  13472155
Chromosome Location . End  13475926 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F15A2.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006610 tre-4 F15A2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F15A2.2 F15A2.2 1908   X: 13472155-13472247

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F15A2.2.1 13472155 13475926 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon257672   93   X: 13472155-13472247 Caenorhabditis elegans
Exon257673   185   X: 13472299-13472483 Caenorhabditis elegans
Exon257674   144   X: 13472528-13472671 Caenorhabditis elegans
Exon257675   276   X: 13473550-13473825 Caenorhabditis elegans
Exon257676   169   X: 13473872-13474040 Caenorhabditis elegans
Exon257677   154   X: 13474330-13474483 Caenorhabditis elegans
Exon257678   109   X: 13474525-13474633 Caenorhabditis elegans
Exon257679   117   X: 13474689-13474805 Caenorhabditis elegans
Exon257680   235   X: 13474851-13475085 Caenorhabditis elegans
Exon257681   144   X: 13475373-13475516 Caenorhabditis elegans
Exon257682   354   X: 13475573-13475926 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F15A2.2.1 13472155 13475926 1

1 Sequence

Length
1980

1 Sequence Ontology Term

Identifier Name Description
transcript