WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01C8.7.1 Sequence Name  T01C8.7.1
Length (nt)  2379   Chromosome Location  X: 16803321-16807115
Chromosome . Primary Identifier  X Chromosome Location . Start  16803321
Chromosome Location . End  16807115 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01C8.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003168 mec-4 T01C8.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01C8.7 T01C8.7 2307   X: 16803392-16803577

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01C8.7.1 16803321 16807115 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon264782   257   X: 16803321-16803577 Caenorhabditis elegans
Exon264783   76   X: 16803717-16803792 Caenorhabditis elegans
Exon264784   129   X: 16803841-16803969 Caenorhabditis elegans
Exon264785   61   X: 16804027-16804087 Caenorhabditis elegans
Exon264786   115   X: 16804132-16804246 Caenorhabditis elegans
Exon264787   96   X: 16804370-16804465 Caenorhabditis elegans
Exon264788   173   X: 16804517-16804689 Caenorhabditis elegans
Exon264789   89   X: 16804783-16804871 Caenorhabditis elegans
Exon264790   158   X: 16804914-16805071 Caenorhabditis elegans
Exon264791   149   X: 16805119-16805267 Caenorhabditis elegans
Exon264792   161   X: 16805365-16805525 Caenorhabditis elegans
Exon264793   112   X: 16805742-16805853 Caenorhabditis elegans
Exon264794   363   X: 16805906-16806268 Caenorhabditis elegans
Exon264795   256   X: 16806316-16806571 Caenorhabditis elegans
Exon264796   184   X: 16806932-16807115 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01C8.7.1 16803321 16807115 -1

1 Sequence

Length
2379

1 Sequence Ontology Term

Identifier Name Description
transcript