WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  A mir-241::gfp fusion containing 1.3 kb 5$(B!l(B to the miR-241 coding sequence resulted in a temporally regulated, but largely spatially distinct, expression pattern from that of mir-48. Notably, hypodermal expression was not consistently observed. Body-wall muscle expression was first detected in L2-stage animals and continued to the adult stage. In the L3 stage, expression was detected in the excretory canal and the distal tip cells, and strong vulval expression was observed during the L4 stage. Primary Identifier  Expr3770
Remark  No expression was observed in mir-241(del)::gfp, which retains 0.73 kb of 5$(B!l(B sequence, indicating that regulatory sequences are present further upstream than for mir-48. Reporter gene fusion type not specified.

5 Anatomy Terms

Definition Name Synonym Primary Identifier
Longitudinal bands of muscle cells surrounding animal body, with one band running in each quadrant of the body, regulated contraction and relaxation of these muscles cause locomotion. body wall musculature body muscle WBbt:0005813
Epidermal layer. hypodermis epidermis WBbt:0005733
Anterior distal tip cell, inhibit meiosis in neighbouring germ cells, lead gonad during morphogenesis, herm gonad anterior distal tip cell gon herm dtc A WBbt:0004520
Posterior distal tip cell, inhibit meiosis in neighbouring germ cells, lead gonad during morphogenesis, herm gonad posterior distal tip cell gon herm dtc P WBbt:0004506
Four processes (canals) of the excretory canal cell each contain a central collecting lumen which feeds to a central lumenal canal in the cell body; the central canal forms a specialized membrane to release fluids into the excretory duct. These five canals form a continuous H-shaped channel which extends almost the full length of the body, generally in contact with the lateral hypodermis and the pseudocoelom. excretory canal canal WBbt:0005775

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003335 mir-241 F56A12.4 Caenorhabditis elegans

4 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038