WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DESeq and EdgeR were used. A threshold of 1.5 log2 fold change and a p value <10 % were applied. let-418: wild-type; let-418(RNAi)-treated embryos; chd-3: chd-3(eh4);controlGFP(RNAi)-treated embryos; chd-3_let-418: chd-3(eh4); let-418(RNAi)-treated embryos. All fold changes are calculated versus wild-type;control(RNAi)-treated embryos. 1h and 3h correspond to the 24- and 100-cell stages, respectively. Description  Transcripts that showed significantly increased expression in 24-cell stage embryo of let-418(RNAi) animals, comparing to in control RNAi (with gfp control vector) animals.
Primary Identifier  WBPaper00050163:let-418(RNAi)_upregulated_24-cell-embryo
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0 Anatomy Terms

148 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000003 aat-2 F07C3.7 Caenorhabditis elegans
WBGene00000023 abt-5 Y53C10A.9 Caenorhabditis elegans
WBGene00000035 ace-1 W09B12.1 Caenorhabditis elegans
WBGene00000068 acy-1 F17C8.1 Caenorhabditis elegans
WBGene00000086 aex-3 C02H7.3 Caenorhabditis elegans
WBGene00000096 ahr-1 C41G7.5 Caenorhabditis elegans
WBGene00000111 alh-5 T08B1.3 Caenorhabditis elegans
WBGene00000266 bre-1 C53B4.7 Caenorhabditis elegans
WBGene00000296 cat-2 B0432.5 Caenorhabditis elegans
WBGene00000403 casy-1 B0034.3 Caenorhabditis elegans
WBGene00000493 che-14 F56H1.1 Caenorhabditis elegans
WBGene00000936 dbl-1 T25F10.2 Caenorhabditis elegans
WBGene00001063 dpy-1 M01E10.2 Caenorhabditis elegans
WBGene00001127 dyf-11 C02H7.1 Caenorhabditis elegans
WBGene00001515 gap-1 T24C12.2 Caenorhabditis elegans
WBGene00001519 gar-3 Y40H4A.1 Caenorhabditis elegans
WBGene00001539 gcy-13 F23H12.6 Caenorhabditis elegans
WBGene00001543 gcy-18 ZK896.8 Caenorhabditis elegans
WBGene00001544 gcy-19 C17F4.6 Caenorhabditis elegans
WBGene00001666 gpa-4 T07A9.7 Caenorhabditis elegans
WBGene00001669 gpa-7 R10H10.5 Caenorhabditis elegans
WBGene00001687 gpn-1 F59D12.4 Caenorhabditis elegans
WBGene00001917 his-43 F08G2.2 Caenorhabditis elegans
WBGene00002055 ifc-1 F37B4.2 Caenorhabditis elegans
WBGene00002983 lgx-1 C54G7.3 Caenorhabditis elegans
WBGene00003165 mec-1 T07H8.4 Caenorhabditis elegans
WBGene00003245 mig-13 F43C9.4 Caenorhabditis elegans
WBGene00003533 nas-14 F09E8.6 Caenorhabditis elegans
WBGene00003573 ncx-8 C13D9.7 Caenorhabditis elegans
WBGene00003618 nhr-19 E02H1.7 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
Levin M, Hashimshony T, Wagner F, Yanai I. Developmental milestones punctuate gene expression in the Caenorhabditis embryo. Dev Cell. 2012 May 15;22(5):1101-8. Epub 2012 May 3. PubMed PMID: 22560298. Supplementary table 1. Fourth cleavage of the AB lineage. Contains 24 cells. 24-cell embryo Ce WBls:0000085

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002637 let-418 F26F12.7 Caenorhabditis elegans

0 Regulated By Molecule