WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DESeq and EdgeR were used. A threshold of 1.5 log2 fold change and a p value <10 % were applied. let-418: wild-type; let-418(RNAi)-treated embryos; chd-3: chd-3(eh4);controlGFP(RNAi)-treated embryos; chd-3_let-418: chd-3(eh4); let-418(RNAi)-treated embryos. All fold changes are calculated versus wild-type;control(RNAi)-treated embryos. 1h and 3h correspond to the 24- and 100-cell stages, respectively. Description  Transcripts that showed significantly increased expression in 24-cell stage embryo of chd-3(eh4)let-418(RNAi) animals, comparing to in N2 animals injected with gfp control RNAi vector.
Primary Identifier  WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo

0 Anatomy Terms

929 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000020 abt-2 F12B6.1 Caenorhabditis elegans
WBGene00000023 abt-5 Y53C10A.9 Caenorhabditis elegans
WBGene00000037 ace-3 Y48B6A.8 Caenorhabditis elegans
WBGene00000232 avr-14 B0207.12 Caenorhabditis elegans
WBGene00000233 avr-15 R11G10.1 Caenorhabditis elegans
WBGene00000253 bli-3 F56C11.1 Caenorhabditis elegans
WBGene00000266 bre-1 C53B4.7 Caenorhabditis elegans
WBGene00000279 cah-1 F54D8.4 Caenorhabditis elegans
WBGene00000280 cah-2 D1022.8 Caenorhabditis elegans
WBGene00000284 cah-6 T28F2.3 Caenorhabditis elegans
WBGene00000397 cdh-5 F08B4.2 Caenorhabditis elegans
WBGene00000402 cdh-10 C45G7.5 Caenorhabditis elegans
WBGene00000403 casy-1 B0034.3 Caenorhabditis elegans
WBGene00000485 che-3 F18C12.1 Caenorhabditis elegans
WBGene00000488 che-7 F26D11.10 Caenorhabditis elegans
WBGene00000491 che-12 B0024.8 Caenorhabditis elegans
WBGene00000492 che-13 F59C6.7 Caenorhabditis elegans
WBGene00000553 cmk-1 K07A9.2 Caenorhabditis elegans
WBGene00000646 H17B01.2 H17B01.2 Caenorhabditis elegans
WBGene00000658 col-83 F33A8.9 Caenorhabditis elegans
WBGene00000687 col-113 C34D4.15 Caenorhabditis elegans
WBGene00000692 col-118 T11B7.3 Caenorhabditis elegans
WBGene00000851 cut-1 C47G2.1 Caenorhabditis elegans
WBGene00000903 daf-7 B0412.2 Caenorhabditis elegans
WBGene00000942 deb-1 ZC477.9 Caenorhabditis elegans
WBGene00001068 dpy-6 F16F9.2 Caenorhabditis elegans
WBGene00001107 dsl-5 F58B3.8 Caenorhabditis elegans
WBGene00001117 dyf-1 F54C1.5 Caenorhabditis elegans
WBGene00001118 dyf-2 ZK520.3 Caenorhabditis elegans
WBGene00001121 dyf-5 M04C9.5 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The C. elegans life stage spanning 155-165 min after first cleavage at 20 Centigrade. Contains 96 cells. 96-cell embryo Ce WBls:0000090

0 Processes

2 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000482 chd-3 T14G8.1 Caenorhabditis elegans
WBGene00002637 let-418 F26F12.7 Caenorhabditis elegans

0 Regulated By Molecule