WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. Description  Top 300 transcripts enriched in ADF, ADL, AFD, ASE, ASG, ASH, ASI, ASJ, ASK, AWA, AWB, AWC according to single cell RNAseq.
Primary Identifier  WBPaper00061340:Ciliated_amphid_neuron

12 Anatomy Terms

Definition Name Synonym Primary Identifier
Neuron class of two ciliated neurons that are part of the amphid sensilla; the endings are in the amphid channel, which is open to the outside. ASH   WBbt:0005665
Neuron class of two neurons that have dual ciliated endings in the amphid sensillum. The endings are in the amphid channel, which is open to the outside. Processes from lateral cell bodies enter the ventral cord via the amphidial commissures and turn anteriorly to enter the nerve ring. The processes of ADF run near the outside surface and posterior face of the ring, in close association with those of AIZ. They meet at the dorsal mid-line and terminate; there is a gap junction at the point or contact. The main synaptic output is to RIA and AIZ; there are also synapses to SMB, AUA and RIR, usually in dyadic combinations with RIA or AIZ. AWB synapses onto ADF in several places, and there are gap junctions to RIH, ADA and AIA. ADF   WBbt:0005660
Neuron class of two ciliated neurons with large, flattened, sheet-like endings that are associated with the sheath cells of the amphid sensilla. AWC   WBbt:0005672
Neuron class of two ciliated neurons that are associated with the sheath cells of the amphid sensilla. AWA   WBbt:0005670
Neuron class of two ciliated neurons with flattened, sheet-like endings that are associated with the sheath cells of the amphid sensilla AWB   WBbt:0005671
Neuron class of two neurons that have dual ciliated endings in the amphid sensillum; the endings are in the amphid channel, which is open to the outside. ADL   WBbt:0005661
Neuron class of two ciliated neurons that are part of the amphid sensillum; the endings of AFD have numerous villi, which poke into the amphid sheath cells. AFD   WBbt:0005662
Neuron class of two ciliated neurons that are part of the amphid sensilla; the endings are in the amphid channel, which is open to the outside. ASI   WBbt:0005666
Neuron class of two ciliated neurons that are part of the amphid sensilla; the endings are in the amphid channel, which is open to the outside ASE   WBbt:0005663
Neuron class of two ciliated neurons that are part of the amphid sensilla; the endings are in the amphid channel, which is open to the outside. ASG   WBbt:0005664
Neuron class of two ciliated neurons that are part of the amphid sensilla. The endings are in the amphid channel, which is open to the outside. ASJ   WBbt:0005667
Neuron class of two ciliated neurons that are part of the amphid sensilla. The endings are in the amphid channel, which is open to the outside. ASK   WBbt:0005668

300 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000099 air-2 B0207.4 Caenorhabditis elegans
WBGene00000257 bmk-1 F23B12.8 Caenorhabditis elegans
WBGene00000262 bra-1 F54B11.6 Caenorhabditis elegans
WBGene00000275 bub-1 R06C7.8 Caenorhabditis elegans
WBGene00000301 cav-1 T13F2.8 Caenorhabditis elegans
WBGene00000405 cdk-1 T05G5.3 Caenorhabditis elegans
WBGene00000411 cdl-1 R06F6.1 Caenorhabditis elegans
WBGene00000413 cdt-1 Y54E10A.15 Caenorhabditis elegans
WBGene00000422 ced-8 F08F1.5 Caenorhabditis elegans
WBGene00000425 ced-11 ZK512.3 Caenorhabditis elegans
WBGene00000458 ceh-37 C37E2.5 Caenorhabditis elegans
WBGene00000463 ceh-43 C28A5.4 Caenorhabditis elegans
WBGene00000468 ces-1 F43G9.11 Caenorhabditis elegans
WBGene00000498 chk-1 Y39H10A.7 Caenorhabditis elegans
WBGene00000503 cht-1 C04F6.3 Caenorhabditis elegans
WBGene00000566 cnt-2 Y39A1A.15 Caenorhabditis elegans
WBGene00000685 col-111 F29B9.9 Caenorhabditis elegans
WBGene00000773 cpf-1 F28C6.3 Caenorhabditis elegans
WBGene00000794 crn-1 Y47G6A.8 Caenorhabditis elegans
WBGene00000863 cya-1 ZK507.6 Caenorhabditis elegans
WBGene00000865 cyb-1 ZC168.4 Caenorhabditis elegans
WBGene00000868 cyb-3 T06E6.2 Caenorhabditis elegans
WBGene00000870 cyd-1 Y38F1A.5 Caenorhabditis elegans
WBGene00000871 cye-1 C37A2.4 Caenorhabditis elegans
WBGene00000961 dgn-1 T21B6.1 Caenorhabditis elegans
WBGene00001002 div-1 R01H10.1 Caenorhabditis elegans
WBGene00001051 cks-1 C09G4.3 Caenorhabditis elegans
WBGene00001103 dsl-1 W09G12.4 Caenorhabditis elegans
WBGene00001104 dsl-2 W09G12.1 Caenorhabditis elegans
WBGene00001511 fzy-1 ZK177.6 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027

0 Processes

0 Regulated By Gene

0 Regulated By Molecule