WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify genes that were significantly differentially expressed between each mutant and the control, linear modelling and empirical Bayes analysis was performed using the limma package. Limma computes an empirical Bayes adjustment for the t-test (moderated t-statistic), which is more robust than the standard two-sample t-test comparisons. To correct for multiple testing, Benjamin and Hochbergs method to control for false discovery rate was used. Genes with an adjusted P value of 0.05 or smaller and a fold-change in expression larger than twofold were considered differentially expressed. Description  Genes down regulated in aak-2 over expression line uthIs202 comparing to in N2.
Primary Identifier  WBPaper00038172:aak-2overexpression_down_regulated

0 Anatomy Terms

344 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000073 add-2 F57F5.4 Caenorhabditis elegans
WBGene00000169 aqp-1 F32A5.5 Caenorhabditis elegans
WBGene00000220 atf-2 K08F8.2 Caenorhabditis elegans
WBGene00000233 avr-15 R11G10.1 Caenorhabditis elegans
WBGene00000246 bcc-1 M7.3 Caenorhabditis elegans
WBGene00000251 bli-1 C09G5.6 Caenorhabditis elegans
WBGene00000402 cdh-10 C45G7.5 Caenorhabditis elegans
WBGene00000521 cky-1 C15C8.2 Caenorhabditis elegans
WBGene00000523 clc-2 C01C10.1 Caenorhabditis elegans
WBGene00000530 clh-3 E04F6.11 Caenorhabditis elegans
WBGene00000963 dhp-1 R06C7.3 Caenorhabditis elegans
WBGene00000979 dhs-16 C10F3.2 Caenorhabditis elegans
WBGene00001059 dpf-6 F44B9.1 Caenorhabditis elegans
WBGene00001064 dpy-2 T14B4.6 Caenorhabditis elegans
WBGene00001069 dpy-7 F46C8.6 Caenorhabditis elegans
WBGene00001070 dpy-8 C31H2.2 Caenorhabditis elegans
WBGene00001250 elt-2 C33D3.1 Caenorhabditis elegans
WBGene00001430 fkb-5 C50F2.6 Caenorhabditis elegans
WBGene00001432 fkb-7 B0511.1 Caenorhabditis elegans
WBGene00001478 fmo-3 Y39A1A.19 Caenorhabditis elegans
WBGene00001523 gbh-2 M05D6.7 Caenorhabditis elegans
WBGene00001570 gei-13 F58A4.11 Caenorhabditis elegans
WBGene00001626 gly-1 F44F4.6 Caenorhabditis elegans
WBGene00001631 gly-6 H38K22.5 Caenorhabditis elegans
WBGene00001636 gly-11 Y75B8A.9 Caenorhabditis elegans
WBGene00001663 gpa-1 T19C4.6 Caenorhabditis elegans
WBGene00001690 grd-1 R08B4.1 Caenorhabditis elegans
WBGene00002393 lpr-1 Y65B4BR.2 Caenorhabditis elegans
WBGene00003102 mab-5 C08C3.3 Caenorhabditis elegans
WBGene00003124 mai-1 K10B3.9 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020142 aak-2 T01C8.1 Caenorhabditis elegans

0 Regulated By Molecule