WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  CellRanger, DecontX, Monocle3, Louvain algorithm. Description  Single-cell RNA-Seq cell group 32 expressed in: Seam cells (bus+) and excretory duct subpopulation.
Primary Identifier  WBPaper00065623:32
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5 Anatomy Terms

Definition Name Synonym Primary Identifier
a group of hypodermal cells that lie along the apical midline of the hypodermis, at the extreme left and right sides between nose and tail seam cell lateral hypodermis WBbt:0005753
seventh pharyngeal muscle cell layer pm7 m7 WBbt:0003721
fifth pharyngeal muscle cell layer pm5 M5 WBbt:0003737
sixth pharyngeal muscle cell layer pm6 m6 WBbt:0003724
cell that forms the duct of the excretory system. excretory duct cell exc duct WBbt:0004540

10 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000256 bli-6 Y73B6BL.34 Caenorhabditis elegans
WBGene00000641 col-65 K08C9.4 Caenorhabditis elegans
WBGene00000653 col-77 M195.1 Caenorhabditis elegans
WBGene00000681 col-107 C34H4.4 Caenorhabditis elegans
WBGene00000704 col-130 F08G5.4 Caenorhabditis elegans
WBGene00000707 col-133 F52B11.4 Caenorhabditis elegans
WBGene00000734 col-161 C50B6.4 Caenorhabditis elegans
WBGene00004300 ram-2 F38A3.2 Caenorhabditis elegans
WBGene00021627 Y47D7A.15 Y47D7A.15 Caenorhabditis elegans
WBGene00044724 R02E4.3 R02E4.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule