WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 221, saeg-1_18803-mpz-2_15880, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:saeg-1_18803-mpz-2_15880

0 Anatomy Terms

109 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000110 alh-4 T05H4.13 Caenorhabditis elegans
WBGene00000138 amx-2 B0019.1 Caenorhabditis elegans
WBGene00000140 anc-1 ZK973.6 Caenorhabditis elegans
WBGene00000149 apl-1 C42D8.8 Caenorhabditis elegans
WBGene00000761 coq-1 C24A11.9 Caenorhabditis elegans
WBGene00001149 bcat-1 K02A4.1 Caenorhabditis elegans
WBGene00001330 eps-8 Y57G11C.24 Caenorhabditis elegans
WBGene00001505 fut-1 K08F8.3 Caenorhabditis elegans
WBGene00001620 glt-1 C12D12.2 Caenorhabditis elegans
WBGene00001851 hif-1 F38A6.3 Caenorhabditis elegans
WBGene00001955 hlh-11 F58A4.7 Caenorhabditis elegans
WBGene00002038 hum-5 T02C12.1 Caenorhabditis elegans
WBGene00002050 ifa-1 F38B2.1 Caenorhabditis elegans
WBGene00002053 ifb-1 F10C1.2 Caenorhabditis elegans
WBGene00002266 lec-3 ZK892.1 Caenorhabditis elegans
WBGene00002915 let-805 H19M22.2 Caenorhabditis elegans
WBGene00002979 lfe-2 C46H11.4 Caenorhabditis elegans
WBGene00002990 lin-1 C37F5.1 Caenorhabditis elegans
WBGene00003151 mca-1 W09C2.3 Caenorhabditis elegans
WBGene00003480 klf-3 F54H5.4 Caenorhabditis elegans
WBGene00003613 nhr-14 T01B10.4 Caenorhabditis elegans
WBGene00003878 pept-3 F56F4.5 Caenorhabditis elegans
WBGene00003936 pat-12 T17H7.4 Caenorhabditis elegans
WBGene00003941 pbo-1 Y71H2AL.1 Caenorhabditis elegans
WBGene00004083 pph-1 C05A2.1 Caenorhabditis elegans
WBGene00004131 tent-5 F55A12.9 Caenorhabditis elegans
WBGene00004182 prk-1 C06E8.3 Caenorhabditis elegans
WBGene00004234 ptr-20 Y53F4B.28 Caenorhabditis elegans
WBGene00004336 ret-1 W06A7.3 Caenorhabditis elegans
WBGene00004736 sca-1 K11D9.2 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule