WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Lists of genes were generated using SAM (version 2.2) with a false discovery rate (FDR) of less than or equal to 5% (Q-value <= 5%). Twenty-seven repeated runs of SAM were performed using variable random seed numbers for each run. During each run of SAM, 100 permutations were performed. Genes (n =129 downregulated, n = 1 upregulated) appearing in at least 80% of all twenty-seven runs of SAM were further considered for signal variation filtering, which was used to selectively identify genes with a 1.5-fold or greater variation between the two genetic conditions used for comparison. Description  Candidate daf-19 up regulated genes with a statistically significant signal variation of 1.5-fold or greater. These were identified using a Significance Analysis of Microarrays (SAM).
Primary Identifier  WBPaper00039866:SAM_daf-19_upregulated
Paste the following link
Lists
This ExpressionCluster isn't in any lists. Upload a list.

0 Anatomy Terms

60 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000217 asp-4 R12H7.2 Caenorhabditis elegans
WBGene00000512 ckb-2 B0285.9 Caenorhabditis elegans
WBGene00000865 cyb-1 ZC168.4 Caenorhabditis elegans
WBGene00000868 cyb-3 T06E6.2 Caenorhabditis elegans
WBGene00001105 dsl-3 Y41D4B.10 Caenorhabditis elegans
WBGene00001821 ham-2 C07A12.1 Caenorhabditis elegans
WBGene00001828 hch-1 F40E10.1 Caenorhabditis elegans
WBGene00001853 hil-2 Y73B6BL.9 Caenorhabditis elegans
WBGene00002008 hsp-4 F43E2.8 Caenorhabditis elegans
WBGene00002015 hsp-16.1 T27E4.8 Caenorhabditis elegans
WBGene00002016 hsp-16.2 Y46H3A.3 Caenorhabditis elegans
WBGene00002026 hsp-70 C12C8.1 Caenorhabditis elegans
WBGene00002124 inx-2 F08G12.10 Caenorhabditis elegans
WBGene00002125 inx-3 F22F4.2 Caenorhabditis elegans
WBGene00003055 lon-1 F48E8.1 Caenorhabditis elegans
WBGene00004786 sex-1 F44A6.2 Caenorhabditis elegans
WBGene00004813 skr-7 Y47D7A.1 Caenorhabditis elegans
WBGene00004819 skr-13 C52D10.8 Caenorhabditis elegans
WBGene00004821 skr-15 F54D10.1 Caenorhabditis elegans
WBGene00006366 sym-1 C44H4.3 Caenorhabditis elegans
WBGene00006649 tth-1 F08F1.8 Caenorhabditis elegans
WBGene00006981 zig-4 C09C7.1 Caenorhabditis elegans
WBGene00007153 clec-41 B0365.6 Caenorhabditis elegans
WBGene00007303 rnh-1.3 C04F12.9 Caenorhabditis elegans
WBGene00007479 C09F9.2 C09F9.2 Caenorhabditis elegans
WBGene00007517 gpx-3 C11E4.2 Caenorhabditis elegans
WBGene00009049 F22B8.7 F22B8.7 Caenorhabditis elegans
WBGene00009156 clec-196 F26D10.12 Caenorhabditis elegans
WBGene00009691 F44E5.4 F44E5.4 Caenorhabditis elegans
WBGene00010362 enu-3.1 H04D03.1 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The C. elegans life stage spanning 520-620min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and tripple fold. A stage between 2-fold embryo and fully-elongated embryo. Also called pretzel embryo or pretzel stage. 3-fold embryo Ce WBls:0000020

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000914 daf-19 F33H1.1 Caenorhabditis elegans

0 Regulated By Molecule