WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For differential gene expression analysis, sets of independent mutant and control mapped reads (e.g biological replicates) were used in cuffdiff analysis. The cutoff of FDR(q value)=0.05 was used as a significance cutoff for all the analyses. Description  Transcripts that showed significantly decreased expression in nos-1(gv5)nos-2(RNAi) comparing to in wild type, in primordial germ cells (PGCs) at embryo stage, according to SMARTseq.
Primary Identifier  WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_embryo_SMARTseq

1 Anatomy Terms

Definition Name Synonym Primary Identifier
member of a set of two cells that generate exclusively sperm and ovum. germline precursor cell PGC WBbt:0006849

10 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003414 mrp-8 Y75B8A.26 Caenorhabditis elegans
WBGene00003783 nos-1 R03D7.7 Caenorhabditis elegans
WBGene00003784 nos-2 ZK1127.1 Caenorhabditis elegans
WBGene00010734 parn-1 K10C8.1 Caenorhabditis elegans
WBGene00012930 obr-1 Y47D3A.17 Caenorhabditis elegans
WBGene00019786 famp-1 M70.4 Caenorhabditis elegans
WBGene00021698 frl-1 Y48G9A.4 Caenorhabditis elegans
WBGene00009247 bath-45 F29C12.5 Caenorhabditis elegans
WBGene00009222 fbxa-95 F28F8.4 Caenorhabditis elegans
WBGene00013348 fbxa-106 Y59A8B.11 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The whole period of embryogenesis in the nematode Caenorhabditis elegans, from the formation of an egg until hatching. embryo Ce WBls:0000003

0 Processes

0 Regulated By Gene

0 Regulated By Molecule