WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  CellRanger, DecontX, Monocle3, Louvain algorithm. Description  Single-cell RNA-Seq cell group 30 expressed in: pm3_pm4_pm5 and pm6_pm7 (pharyngeal muscle).
Primary Identifier  WBPaper00065623:30
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5 Anatomy Terms

Definition Name Synonym Primary Identifier
seventh pharyngeal muscle cell layer pm7 m7 WBbt:0003721
third pharyngeal muscle cell layer pm3 M3 WBbt:0003740
fifth pharyngeal muscle cell layer pm5 M5 WBbt:0003737
fourth pharyngeal muscle cell layer pm4 M4 WBbt:0003739
sixth pharyngeal muscle cell layer pm6 m6 WBbt:0003724

10 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000780 cpn-4 F49D11.8 Caenorhabditis elegans
WBGene00002011 hsp-12.2 C14B9.1 Caenorhabditis elegans
WBGene00003371 mlc-3 F09F7.2 Caenorhabditis elegans
WBGene00006583 tnc-2 ZK673.7 Caenorhabditis elegans
WBGene00006586 tni-4 W03F8.1 Caenorhabditis elegans
WBGene00016898 clik-2 C53C9.2 Caenorhabditis elegans
WBGene00020192 T03F1.11 T03F1.11 Caenorhabditis elegans
WBGene00044260 Y87G2A.19 Y87G2A.19 Caenorhabditis elegans
WBGene00019361 clik-3 K03E5.2 Caenorhabditis elegans
WBGene00044554 F41E6.15 F41E6.15 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule