WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  The dysregulated expression of miRNAs in GO-exposed nematodes was analyzed by DESeq (an R package, a powerful tool to estimate the variance and test for differential expression). The data were extracted as up- or down-regulated miRNAs according to a cutoff of 2 fold change, and were presented in the scatter diagram after normalization. Description  miRNAs that showed increased expression after exposure to graphene oxide (GO)
Primary Identifier  WBPaper00045209:graphene-oxide_upregulated
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0 Anatomy Terms

23 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003264 mir-36 Y62F5A.3 Caenorhabditis elegans
WBGene00003338 mir-244 T04D1.5 Caenorhabditis elegans
WBGene00003328 mir-235 T09B4.12 Caenorhabditis elegans
WBGene00195238 mir-4805 K02E7.13 Caenorhabditis elegans
WBGene00077723 mir-1830 B0286.7 Caenorhabditis elegans
WBGene00077709 mir-1822 ZK84.8 Caenorhabditis elegans
WBGene00003329 mir-236 C52E12.7 Caenorhabditis elegans
WBGene00003271 mir-43 ZK930.9 Caenorhabditis elegans
WBGene00219222 mir-4806 C44C11.7 Caenorhabditis elegans
WBGene00219265 mir-4937 C07B3.1 Caenorhabditis elegans
WBGene00194829 mir-2217.1 F36H12.64 Caenorhabditis elegans
WBGene00077726 mir-1820 C46A5.10 Caenorhabditis elegans
WBGene00003340 mir-246 ZK593.10 Caenorhabditis elegans
WBGene00003353 mir-259 F25D1.6 Caenorhabditis elegans
WBGene00045360 mir-800 R04A9.8 Caenorhabditis elegans
WBGene00219247 mir-4807 Y59E1B.6 Caenorhabditis elegans
WBGene00219250 mir-4810.1 Y59E1B.9 Caenorhabditis elegans
WBGene00003310 mir-82 T07D1.7 Caenorhabditis elegans
WBGene00003341 mir-247 C39E6.7 Caenorhabditis elegans
WBGene00023456 mir-360 Y23B4A.3 Caenorhabditis elegans
WBGene00003333 mir-239.2 C34E11.6 Caenorhabditis elegans
WBGene00014391 mir-392 F54B11.12 Caenorhabditis elegans
WBGene00189970 mir-4812 F46F2.8 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage after an hermaphrodite animal is fully-developed and reaches maturity. adult hermaphrodite Ce WBls:0000057

0 Processes

0 Regulated By Gene

1 Regulated By Molecule

Name Primary Identifier
graphene oxide WBMol:00005439