WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Description  Genes with no change in hcf-1(-), no change in sir-2.1(O/E) and downregulated in daf-2(-).
Primary Identifier  WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
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0 Anatomy Terms

729 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000092 ags-3 F32A6.4 Caenorhabditis elegans
WBGene00000143 apc-2 K06H7.6 Caenorhabditis elegans
WBGene00000145 apc-11 F35G12.9 Caenorhabditis elegans
WBGene00000159 aps-1 F29G9.3 Caenorhabditis elegans
WBGene00000165 aps-3 Y48G8AL.14 Caenorhabditis elegans
WBGene00000183 arf-5 F57H12.1 Caenorhabditis elegans
WBGene00000187 arl-1 F54C9.10 Caenorhabditis elegans
WBGene00000192 arl-8 Y57G11C.13 Caenorhabditis elegans
WBGene00000209 asg-1 K07A12.3 Caenorhabditis elegans
WBGene00000249 bir-1 T27F2.3 Caenorhabditis elegans
WBGene00000262 bra-1 F54B11.6 Caenorhabditis elegans
WBGene00000270 bre-5 T12G3.8 Caenorhabditis elegans
WBGene00000376 ccr-4 ZC518.3 Caenorhabditis elegans
WBGene00000377 cct-1 T05C12.7 Caenorhabditis elegans
WBGene00000380 cct-5 C07G2.3 Caenorhabditis elegans
WBGene00000387 cdc-25.2 F16B4.8 Caenorhabditis elegans
WBGene00000392 cdd-2 F49E8.4 Caenorhabditis elegans
WBGene00000416 ced-2 Y41D4B.13 Caenorhabditis elegans
WBGene00000500 chn-1 T09B4.10 Caenorhabditis elegans
WBGene00000502 chp-1 Y110A7A.13 Caenorhabditis elegans
WBGene00000532 clh-5 C07H4.2 Caenorhabditis elegans
WBGene00000550 clu-1 F55H2.6 Caenorhabditis elegans
WBGene00000708 col-135 M199.5 Caenorhabditis elegans
WBGene00000765 coq-5 ZK652.9 Caenorhabditis elegans
WBGene00000773 cpf-1 F28C6.3 Caenorhabditis elegans
WBGene00000814 csn-2 B0025.2 Caenorhabditis elegans
WBGene00000835 cuc-1 ZK652.11 Caenorhabditis elegans
WBGene00000836 cul-1 D2045.6 Caenorhabditis elegans
WBGene00000840 cul-5 ZK856.1 Caenorhabditis elegans
WBGene00000866 cyb-2.1 Y43E12A.1 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000898 daf-2 Y55D5A.5 Caenorhabditis elegans

0 Regulated By Molecule