WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Using the Cufflink package and CuffDiff application from Galaxy, FPKM (Fragments Per Kilobase of transcript per Million mapped reads) were calculated and tested for differential expression with a FDR score of 5%. Description  Transcripts that showed significantly decreased expression in daf-16(RNAi) animals comparing to in control animals.
Primary Identifier  WBPaper00050332:daf-16(RNAi)_downregulated
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0 Anatomy Terms

284 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000022 abt-4 Y39D8C.1 Caenorhabditis elegans
WBGene00000031 abu-8 C03A7.14 Caenorhabditis elegans
WBGene00000103 akt-2 F28H6.1 Caenorhabditis elegans
WBGene00000169 aqp-1 F32A5.5 Caenorhabditis elegans
WBGene00000214 asp-1 Y39B6A.20 Caenorhabditis elegans
WBGene00000216 asp-3 H22K11.1 Caenorhabditis elegans
WBGene00000298 cat-4 F32G8.6 Caenorhabditis elegans
WBGene00000535 cpi-1 K08B4.6 Caenorhabditis elegans
WBGene00000599 col-10 B0222.8 Caenorhabditis elegans
WBGene00000601 col-12 F15H10.1 Caenorhabditis elegans
WBGene00000641 col-65 K08C9.4 Caenorhabditis elegans
WBGene00000649 col-73 F11G11.12 Caenorhabditis elegans
WBGene00000666 col-91 F09G8.6 Caenorhabditis elegans
WBGene00000699 col-125 C29F4.1 Caenorhabditis elegans
WBGene00000704 col-130 F08G5.4 Caenorhabditis elegans
WBGene00000707 col-133 F52B11.4 Caenorhabditis elegans
WBGene00000711 col-138 C52D10.13 Caenorhabditis elegans
WBGene00000734 col-161 C50B6.4 Caenorhabditis elegans
WBGene00000738 col-165 F14H12.1 Caenorhabditis elegans
WBGene00000739 col-166 T07H6.3 Caenorhabditis elegans
WBGene00000783 cpr-3 T10H4.12 Caenorhabditis elegans
WBGene00000831 ctl-2 Y54G11A.5 Caenorhabditis elegans
WBGene00000912 daf-16 R13H8.1 Caenorhabditis elegans
WBGene00000973 dhs-9 Y32H12A.3 Caenorhabditis elegans
WBGene00000975 dhs-12 K08F4.9 Caenorhabditis elegans
WBGene00001158 ech-9 F01G10.3 Caenorhabditis elegans
WBGene00001244 elo-6 F41H10.8 Caenorhabditis elegans
WBGene00001476 fmo-1 K08C7.2 Caenorhabditis elegans
WBGene00001477 fmo-2 K08C7.5 Caenorhabditis elegans
WBGene00001620 glt-1 C12D12.2 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000912 daf-16 R13H8.1 Caenorhabditis elegans

0 Regulated By Molecule