WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Description  Genes downregulated in hcf-1(-), downregulated in sir-2.1(O/E) and downregulated in daf-2(-).
Primary Identifier  WBPaper00040184:hcf-1down_sir-2.1down_daf-2down
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0 Anatomy Terms

263 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000005 aat-4 T13A10.10 Caenorhabditis elegans
WBGene00000007 aat-6 T11F9.4 Caenorhabditis elegans
WBGene00000041 aco-2 F54H12.1 Caenorhabditis elegans
WBGene00000081 ads-1 Y50D7A.7 Caenorhabditis elegans
WBGene00000136 amt-4 C05E11.5 Caenorhabditis elegans
WBGene00000178 aqp-10 ZK1321.3 Caenorhabditis elegans
WBGene00000179 aqp-11 ZK525.2 Caenorhabditis elegans
WBGene00000283 cah-5 R173.1 Caenorhabditis elegans
WBGene00000391 cdd-1 C47D2.2 Caenorhabditis elegans
WBGene00000412 cdr-1 F35E8.11 Caenorhabditis elegans
WBGene00000533 clh-6 R07B7.1 Caenorhabditis elegans
WBGene00000539 cln-3.1 F07B10.1 Caenorhabditis elegans
WBGene00000541 cln-3.3 ZC190.1 Caenorhabditis elegans
WBGene00000620 col-43 ZC513.8 Caenorhabditis elegans
WBGene00000722 col-149 B0024.1 Caenorhabditis elegans
WBGene00000785 cpr-5 W07B8.5 Caenorhabditis elegans
WBGene00000799 crn-6 K04H4.6 Caenorhabditis elegans
WBGene00001099 dsc-4 K02D7.4 Caenorhabditis elegans
WBGene00001164 efn-3 F15A2.5 Caenorhabditis elegans
WBGene00001230 eif-3.G F22B5.2 Caenorhabditis elegans
WBGene00001399 fat-7 F10D2.9 Caenorhabditis elegans
WBGene00001691 grd-2 F46B3.5 Caenorhabditis elegans
WBGene00001993 hpd-1 T21C12.2 Caenorhabditis elegans
WBGene00002007 hsp-3 C15H9.6 Caenorhabditis elegans
WBGene00002083 inf-1 F57B9.6 Caenorhabditis elegans
WBGene00002090 ins-7 ZK1251.2 Caenorhabditis elegans
WBGene00003169 mec-5 E03G2.3 Caenorhabditis elegans
WBGene00003519 nac-3 K08E5.2 Caenorhabditis elegans
WBGene00003571 ncx-6 C07A9.4 Caenorhabditis elegans
WBGene00003577 ndg-4 F56F3.2 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

3 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000898 daf-2 Y55D5A.5 Caenorhabditis elegans
WBGene00001827 hcf-1 C46A5.9 Caenorhabditis elegans
WBGene00004800 sir-2.1 R11A8.4 Caenorhabditis elegans

0 Regulated By Molecule