WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Data normalization, scaling and 2 -way Anova was used to identify differentially expressed genes, using Partek Geno mics Suite (v6.5). Average linkage gene clustering was performed with a Euclidean distance using Hierarchical clustering. The genes with statistically significant changes between the treatments and strains were identified using Anova streamlined (Partek Genomic Suite (v6.5)). Only genes with a fold change higher than 1.3 and p-value lower than 0.05 were considered. Description  Genes up-regulated during spg-7(RNAi) treatment that are dependent on atfs-1(tm4525).
Primary Identifier  WBPaper00041370:spg-7(RNAi)_upregulated_atfs-1_dependent

0 Anatomy Terms

360 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000372 cyp-13A7 T10B9.10 Caenorhabditis elegans
WBGene00000500 chn-1 T09B4.10 Caenorhabditis elegans
WBGene00000522 clc-1 C09F12.1 Caenorhabditis elegans
WBGene00000536 clk-1 ZC395.2 Caenorhabditis elegans
WBGene00000558 cnc-4 R09B5.9 Caenorhabditis elegans
WBGene00000761 coq-1 C24A11.9 Caenorhabditis elegans
WBGene00000767 coq-8 C35D10.4 Caenorhabditis elegans
WBGene00000977 dhs-14 R05D8.8 Caenorhabditis elegans
WBGene00001028 dnj-10 F22B7.5 Caenorhabditis elegans
WBGene00001093 drp-1 T12E12.4 Caenorhabditis elegans
WBGene00001158 ech-9 F01G10.3 Caenorhabditis elegans
WBGene00001244 elo-6 F41H10.8 Caenorhabditis elegans
WBGene00001262 emb-8 K10D2.6 Caenorhabditis elegans
WBGene00001394 fat-2 W02A2.1 Caenorhabditis elegans
WBGene00001395 fat-3 W08D2.4 Caenorhabditis elegans
WBGene00001748 gsp-2 F56C9.1 Caenorhabditis elegans
WBGene00001752 gst-4 K08F4.7 Caenorhabditis elegans
WBGene00001762 gst-14 F37B1.3 Caenorhabditis elegans
WBGene00001777 gst-29 Y53F4B.32 Caenorhabditis elegans
WBGene00001813 haf-3 F57A10.3 Caenorhabditis elegans
WBGene00002131 inx-9 ZK792.3 Caenorhabditis elegans
WBGene00002262 ldh-1 F13D12.2 Caenorhabditis elegans
WBGene00002274 lec-11 F38A5.3 Caenorhabditis elegans
WBGene00002981 lgg-2 ZK593.6 Caenorhabditis elegans
WBGene00003063 lpd-7 R13A5.12 Caenorhabditis elegans
WBGene00003091 lys-2 Y22F5A.5 Caenorhabditis elegans
WBGene00003124 mai-1 K10B3.9 Caenorhabditis elegans
WBGene00003473 mtl-1 K11G9.6 Caenorhabditis elegans
WBGene00003510 mxl-2 F40G9.11 Caenorhabditis elegans
WBGene00003572 ncx-7 C07A9.11 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

2 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004978 spg-7 Y47G6A.10 Caenorhabditis elegans
WBGene00013878 atfs-1 ZC376.7 Caenorhabditis elegans

0 Regulated By Molecule