WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DAM methylation profiles derived from three biological replicates fed on daf-2 RNAi (no heat shock) showed a high degree of correlation between replicates. Sequences was identified with methylation peaks in the top 1% of smoothed log2 ratios (log2 ratio > 1.5) and within the gene boundary or 2kb upstream of the translational start. This defined 1135 methylation peaks and 907 associated genes, with a false discovery rate of <5%. Description  DAF-16 binding DNA target identified by chromatin profiling by DNA adenine methyltransferase identification (DamID).
Primary Identifier  WBPaper00037055:DAF-16_binding_DNA

0 Anatomy Terms

894 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000003 aat-2 F07C3.7 Caenorhabditis elegans
WBGene00000038 ace-4 Y48B6A.7 Caenorhabditis elegans
WBGene00000041 aco-2 F54H12.1 Caenorhabditis elegans
WBGene00000074 adm-2 C04A11.4 Caenorhabditis elegans
WBGene00000083 adt-2 F08C6.1 Caenorhabditis elegans
WBGene00000084 aex-1 D2030.10 Caenorhabditis elegans
WBGene00000092 ags-3 F32A6.4 Caenorhabditis elegans
WBGene00000100 ajm-1 C25A11.4 Caenorhabditis elegans
WBGene00000102 akt-1 C12D8.10 Caenorhabditis elegans
WBGene00000103 akt-2 F28H6.1 Caenorhabditis elegans
WBGene00000109 alh-3 F36H1.6 Caenorhabditis elegans
WBGene00000140 anc-1 ZK973.6 Caenorhabditis elegans
WBGene00000149 apl-1 C42D8.8 Caenorhabditis elegans
WBGene00000170 aqp-2 C01G6.1 Caenorhabditis elegans
WBGene00000172 aqp-4 F40F9.9 Caenorhabditis elegans
WBGene00000224 atgp-1 F26D10.9 Caenorhabditis elegans
WBGene00000228 atn-1 W04D2.1 Caenorhabditis elegans
WBGene00000268 bre-3 B0464.4 Caenorhabditis elegans
WBGene00000288 cal-4 T07G12.1 Caenorhabditis elegans
WBGene00000302 cav-2 C56A3.7 Caenorhabditis elegans
WBGene00000368 ccb-1 T28F2.5 Caenorhabditis elegans
WBGene00000376 ccr-4 ZC518.3 Caenorhabditis elegans
WBGene00000380 cct-5 C07G2.3 Caenorhabditis elegans
WBGene00000390 cdc-42 R07G3.1 Caenorhabditis elegans
WBGene00000403 casy-1 B0034.3 Caenorhabditis elegans
WBGene00000407 cdk-5 T27E9.3 Caenorhabditis elegans
WBGene00000414 cec-1 ZK1236.2 Caenorhabditis elegans
WBGene00000423 ced-9 T07C4.8 Caenorhabditis elegans
WBGene00000425 ced-11 ZK512.3 Caenorhabditis elegans
WBGene00000446 ceh-23 ZK652.5 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000912 daf-16 R13H8.1 Caenorhabditis elegans

0 Regulated By Molecule