WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. Description  Top 300 transcripts enriched in ABarpaapap, ABarpaappa, ABarpaappp, ABarppaapa, ABarpppapa, ABplaapppa, ABplaapppp, ABplappppa, ABpraapppa, ABpraapppp, ABprappppa according to single cell RNAseq.
Primary Identifier  WBPaper00061340:hyp7_AB_lineage
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11 Anatomy Terms

Definition Name Synonym Primary Identifier
Embryonic cell of pedigree ABplaapppp, precursor of embryonic large hypodermal syncytium. ABplaapppp hyp7 WBbt:0006477
Embryonic cell of lineage ABarpaappa fuses into embryonic large hypodermal syncytium hyp7. ABarpaappa   WBbt:0005939
Embryonic cell of pedigree ABplappppa, precursor of embryonic large hypodermal syncytium. ABplappppa lineage name: ABplappppa WBbt:0004671
Embryonic cell of lineage ABarpaappp fuses into embryonic large hypodermal syncytium hyp7. ABarpaappp   WBbt:0006070
Embryonic cell of lineage ABarppaapa fuses into embryonic large hypodermal syncytium hyp7. ABarppaapa   WBbt:0006180
Embryonic cell of lineage ABpraapppa fuses into embryonic large hypodermal syncytium hyp7. ABpraapppa   WBbt:0006244
Embryonic cell of lineage ABprappppa fuses into embryonic large hypodermal syncytium hyp7. ABprappppa   WBbt:0006226
Embryonic cell of lineage ABarpaapap fuses into embryonic large hypodermal syncytium hyp7. ABarpaapap lineage name: ABarpaapap WBbt:0006375
Embryonic cell of lineage ABarpppapa fuses into embryonic large hypodermal syncytium hyp7. ABarpppapa   WBbt:0006433
Embryonic cell of lineage ABpraapppp fuses into embryonic large hypodermal syncytium hyp7. ABpraapppp   WBbt:0006608
Embryonic cell of pedigree ABplaapppa, precursor of embryonic large hypodermal syncytium. ABplaapppa hyp7 WBbt:0006735

300 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000039 acn-1 C42D8.5 Caenorhabditis elegans
WBGene00000040 aco-1 ZK455.1 Caenorhabditis elegans
WBGene00000116 alh-10 C54D1.4 Caenorhabditis elegans
WBGene00000240 pah-1 K08F8.4 Caenorhabditis elegans
WBGene00000415 ced-1 Y47H9C.4 Caenorhabditis elegans
WBGene00000503 cht-1 C04F6.3 Caenorhabditis elegans
WBGene00000517 cki-2 T05A6.2 Caenorhabditis elegans
WBGene00000652 col-76 M110.1 Caenorhabditis elegans
WBGene00000695 col-121 F56D5.1 Caenorhabditis elegans
WBGene00000731 col-158 D2023.7 Caenorhabditis elegans
WBGene00000778 cpn-2 D1069.2 Caenorhabditis elegans
WBGene00000831 ctl-2 Y54G11A.5 Caenorhabditis elegans
WBGene00000882 cyn-6 F42G9.2 Caenorhabditis elegans
WBGene00000929 dao-3 K07E3.3 Caenorhabditis elegans
WBGene00000968 dhs-4 T05F1.10 Caenorhabditis elegans
WBGene00000984 dhs-21 R11D1.11 Caenorhabditis elegans
WBGene00000990 dhs-27 C04F6.5 Caenorhabditis elegans
WBGene00000991 dhs-28 M03A8.1 Caenorhabditis elegans
WBGene00001038 dnj-20 T15H9.7 Caenorhabditis elegans
WBGene00001064 dpy-2 T14B4.6 Caenorhabditis elegans
WBGene00001065 dpy-3 EGAP7.1 Caenorhabditis elegans
WBGene00001069 dpy-7 F46C8.6 Caenorhabditis elegans
WBGene00001072 dpy-10 T14B4.7 Caenorhabditis elegans
WBGene00001073 dpy-11 F46E10.9 Caenorhabditis elegans
WBGene00001075 dpy-14 H27M09.4 Caenorhabditis elegans
WBGene00001076 dpy-17 F54D8.1 Caenorhabditis elegans
WBGene00001105 dsl-3 Y41D4B.10 Caenorhabditis elegans
WBGene00001108 dsl-6 H02I12.4 Caenorhabditis elegans
WBGene00001157 ech-8 F01G10.2 Caenorhabditis elegans
WBGene00001251 elt-3 K02B9.4 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027

0 Processes

0 Regulated By Gene

0 Regulated By Molecule