WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differential gene expression was assessed with a mixed regression model, including pathogen as a fixed and array as a random factor using the restricted maximum likelihood (REML) approach. The pathogen effect was evaluated with an F3-test using a pooled estimator of the error-variance and comparison of the tabulated p-values with the F distribution rather than a permutation analysis, which was unsuitable for this study because of low sample size (maximum of four replicates). To correct for multiple testing authors adjusted the significance level with the help of the false discovery rate (FDR). Description  Transcripts that showed significantly increased expression after 8 hour of exposure of C.elegans strain MY18 to pathogenic B. thuringiensis B-18247.
Primary Identifier  WBPaper00040209:B.thuringiensis_upregulated_MY18 Regulated By Treatment  Bacteria infection: Bacillus thuringiensis B-18247

0 Anatomy Terms

154 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000050 acr-11 D2092.3 Caenorhabditis elegans
WBGene00000254 bli-4 K04F10.4 Caenorhabditis elegans
WBGene00000284 cah-6 T28F2.3 Caenorhabditis elegans
WBGene00000409 cdk-8 F39H11.3 Caenorhabditis elegans
WBGene00000521 cky-1 C15C8.2 Caenorhabditis elegans
WBGene00000667 col-92 W05B2.6 Caenorhabditis elegans
WBGene00000668 col-93 W05B2.5 Caenorhabditis elegans
WBGene00000732 col-159 F57B1.3 Caenorhabditis elegans
WBGene00000738 col-165 F14H12.1 Caenorhabditis elegans
WBGene00000783 cpr-3 T10H4.12 Caenorhabditis elegans
WBGene00001340 etr-1 T01D1.2 Caenorhabditis elegans
WBGene00001368 exc-7 F35H8.5 Caenorhabditis elegans
WBGene00001481 fog-1 Y54E10A.4 Caenorhabditis elegans
WBGene00001559 gei-1 F45H7.2 Caenorhabditis elegans
WBGene00001637 gly-12 F48E3.1 Caenorhabditis elegans
WBGene00001953 hlh-8 C02B8.4 Caenorhabditis elegans
WBGene00002027 hsr-9 T05F1.6 Caenorhabditis elegans
WBGene00002207 sid-3 B0302.1 Caenorhabditis elegans
WBGene00002827 let-653 C29E6.1 Caenorhabditis elegans
WBGene00003090 lys-1 Y22F5A.4 Caenorhabditis elegans
WBGene00003091 lys-2 Y22F5A.5 Caenorhabditis elegans
WBGene00003092 lys-3 Y22F5A.6 Caenorhabditis elegans
WBGene00003220 mes-2 R06A4.7 Caenorhabditis elegans
WBGene00003472 mtk-1 B0414.7 Caenorhabditis elegans
WBGene00003595 ngn-1 Y69A2AR.29 Caenorhabditis elegans
WBGene00003596 ngp-1 T19A6.2 Caenorhabditis elegans
WBGene00003623 nhr-25 F11C1.6 Caenorhabditis elegans
WBGene00003630 nhr-40 T03G6.2 Caenorhabditis elegans
WBGene00003799 npp-13 Y37E3.15 Caenorhabditis elegans
WBGene00003840 ocr-3 T10B10.7 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

0 Regulated By Gene

0 Regulated By Molecule