WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differential gene expression was assessed with a mixed regression model, including pathogen as a fixed and array as a random factor using the restricted maximum likelihood (REML) approach. The pathogen effect was evaluated with an F3-test using a pooled estimator of the error-variance and comparison of the tabulated p-values with the F distribution rather than a permutation analysis, which was unsuitable for this study because of low sample size (maximum of four replicates). To correct for multiple testing authors adjusted the significance level with the help of the false discovery rate (FDR). Description  Transcripts that showed significantly increased expression after 8 hour of exposure of C.elegans strain N2 to pathogenic B. thuringiensis B-18247.
Primary Identifier  WBPaper00040209:B.thuringiensis_upregulated_N2 Regulated By Treatment  Bacteria infection: Bacillus thuringiensis B-18247

0 Anatomy Terms

163 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000018 abl-1 M79.1 Caenorhabditis elegans
WBGene00000050 acr-11 D2092.3 Caenorhabditis elegans
WBGene00000254 bli-4 K04F10.4 Caenorhabditis elegans
WBGene00000284 cah-6 T28F2.3 Caenorhabditis elegans
WBGene00000380 cct-5 C07G2.3 Caenorhabditis elegans
WBGene00000521 cky-1 C15C8.2 Caenorhabditis elegans
WBGene00000522 clc-1 C09F12.1 Caenorhabditis elegans
WBGene00000732 col-159 F57B1.3 Caenorhabditis elegans
WBGene00000783 cpr-3 T10H4.12 Caenorhabditis elegans
WBGene00000787 cps-6 C41D11.8 Caenorhabditis elegans
WBGene00001059 dpf-6 F44B9.1 Caenorhabditis elegans
WBGene00001337 ears-1 ZC434.5 Caenorhabditis elegans
WBGene00001559 gei-1 F45H7.2 Caenorhabditis elegans
WBGene00001632 gly-7 Y46H3A.6 Caenorhabditis elegans
WBGene00001642 gly-17 T15D6.3 Caenorhabditis elegans
WBGene00001682 gpc-2 F08B6.2 Caenorhabditis elegans
WBGene00001953 hlh-8 C02B8.4 Caenorhabditis elegans
WBGene00002027 hsr-9 T05F1.6 Caenorhabditis elegans
WBGene00002071 ile-2 T04G9.3 Caenorhabditis elegans
WBGene00002207 sid-3 B0302.1 Caenorhabditis elegans
WBGene00002215 klc-2 C18C4.10 Caenorhabditis elegans
WBGene00002271 lec-8 R07B1.10 Caenorhabditis elegans
WBGene00002272 lec-9 C16H3.2 Caenorhabditis elegans
WBGene00002827 let-653 C29E6.1 Caenorhabditis elegans
WBGene00003090 lys-1 Y22F5A.4 Caenorhabditis elegans
WBGene00003091 lys-2 Y22F5A.5 Caenorhabditis elegans
WBGene00003220 mes-2 R06A4.7 Caenorhabditis elegans
WBGene00003472 mtk-1 B0414.7 Caenorhabditis elegans
WBGene00003623 nhr-25 F11C1.6 Caenorhabditis elegans
WBGene00003710 nhr-120 C25B8.6 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

0 Regulated By Gene

0 Regulated By Molecule