WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively. Description  miRNA with decreased expression in prg-1(wm161) L1 larva comparing to in prg-1(wm161) embryo.
Primary Identifier  WBPaper00045316:miRNA_prg-1_L1_vs_embryo_downregulated_adult

0 Anatomy Terms

36 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003263 mir-35 Y62F5A.2 Caenorhabditis elegans
WBGene00003264 mir-36 Y62F5A.3 Caenorhabditis elegans
WBGene00003265 mir-37 Y62F5A.4 Caenorhabditis elegans
WBGene00003284 mir-56 F09A5.8 Caenorhabditis elegans
WBGene00219219 mir-5546 Y71F9AL.22 Caenorhabditis elegans
WBGene00003338 mir-244 T04D1.5 Caenorhabditis elegans
WBGene00003328 mir-235 T09B4.12 Caenorhabditis elegans
WBGene00003307 mir-79 C12C8.4 Caenorhabditis elegans
WBGene00077717 mir-1823 T07D10.9 Caenorhabditis elegans
WBGene00077709 mir-1822 ZK84.8 Caenorhabditis elegans
WBGene00003266 mir-38 Y62F5A.5 Caenorhabditis elegans
WBGene00003267 mir-39 Y62F5A.6 Caenorhabditis elegans
WBGene00003268 mir-40 Y62F5A.7 Caenorhabditis elegans
WBGene00003269 mir-41 Y62F5A.8 Caenorhabditis elegans
WBGene00003270 mir-42 ZK930.8 Caenorhabditis elegans
WBGene00003272 mir-44 ZK930.10 Caenorhabditis elegans
WBGene00219226 mir-4929 E01G4.9 Caenorhabditis elegans
WBGene00003292 mir-64 Y48G9A.13 Caenorhabditis elegans
WBGene00003293 mir-65 Y48G9A.14 Caenorhabditis elegans
WBGene00195008 mir-4813 F35G12.13 Caenorhabditis elegans
WBGene00003295 mir-67 EGAP1.2 Caenorhabditis elegans
WBGene00194827 mir-2213 F31E3.7 Caenorhabditis elegans
WBGene00003324 mir-231 R13A5.14 Caenorhabditis elegans
WBGene00077725 mir-1832.1 C18D11.11 Caenorhabditis elegans
WBGene00194824 mir-2209.1 Y55F3AM.18 Caenorhabditis elegans
WBGene00003279 mir-51 F36H1.7 Caenorhabditis elegans
WBGene00003281 mir-53 F36H1.8 Caenorhabditis elegans
WBGene00003287 mir-59 B0035.17 Caenorhabditis elegans
WBGene00003280 mir-52 Y37A1B.16 Caenorhabditis elegans
WBGene00045354 mir-796 C14E2.8 Caenorhabditis elegans

3 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024
  The whole period of embryogenesis in the nematode Caenorhabditis elegans, from the formation of an egg until hatching. embryo Ce WBls:0000003
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule