WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively. Description  miRNA with increased expression in N2 L1 larva comparing to in N2 embryo.
Primary Identifier  WBPaper00045316:miRNA_N2_L1_vs_embryo_upregulated_adult

0 Anatomy Terms

31 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003262 mir-34 Y41G9A.7 Caenorhabditis elegans
WBGene00003289 mir-61 F55A11.9 Caenorhabditis elegans
WBGene00003299 mir-71 F16A11.4 Caenorhabditis elegans
WBGene00003300 mir-72 F53G2.9 Caenorhabditis elegans
WBGene00003288 mir-60 C32D5.13 Caenorhabditis elegans
WBGene00003346 mir-252 W02B12.14 Caenorhabditis elegans
WBGene00003273 mir-45 ZK930.11 Caenorhabditis elegans
WBGene00003292 mir-64 Y48G9A.13 Caenorhabditis elegans
WBGene00003331 mir-238 K01F9.5 Caenorhabditis elegans
WBGene00003318 mir-90 K01F9.1 Caenorhabditis elegans
WBGene00003274 mir-46 ZK525.3 Caenorhabditis elegans
WBGene00003337 mir-243 R08C7.14 Caenorhabditis elegans
WBGene00003321 mir-228 T12E12.7 Caenorhabditis elegans
WBGene00003311 mir-83 C06A6.6 Caenorhabditis elegans
WBGene00003325 mir-232 F13H10.7 Caenorhabditis elegans
WBGene00003279 mir-51 F36H1.7 Caenorhabditis elegans
WBGene00003287 mir-59 B0035.17 Caenorhabditis elegans
WBGene00003319 mir-124 C29E6.7 Caenorhabditis elegans
WBGene00003298 mir-70 T10H9.7 Caenorhabditis elegans
WBGene00003342 mir-248 AH9.5 Caenorhabditis elegans
WBGene00003303 mir-75 T24D8.8 Caenorhabditis elegans
WBGene00003343 mir-249 Y48D7A.3 Caenorhabditis elegans
WBGene00003323 mir-230 F46G11.5 Caenorhabditis elegans
WBGene00045352 mir-791 F13D11.5 Caenorhabditis elegans
WBGene00077721 mir-1022 K10C2.9 Caenorhabditis elegans
WBGene00003345 mir-251 F59F3.7 Caenorhabditis elegans
WBGene00003333 mir-239.2 C34E11.6 Caenorhabditis elegans
WBGene00003332 mir-239.1 C34E11.5 Caenorhabditis elegans
WBGene00003283 mir-55 F09A5.6 Caenorhabditis elegans
WBGene00003275 mir-47 K02B9.5 Caenorhabditis elegans

3 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024
  The whole period of embryogenesis in the nematode Caenorhabditis elegans, from the formation of an egg until hatching. embryo Ce WBls:0000003
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule