WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively. Description  miRNA with decreased expression in N2 L4 larva comparing to in N2 L3 larva.
Primary Identifier  WBPaper00045316:miRNA_N2_L4_vs_L3_downregulated_adult

0 Anatomy Terms

13 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003289 mir-61 F55A11.9 Caenorhabditis elegans
WBGene00003338 mir-244 T04D1.5 Caenorhabditis elegans
WBGene00003288 mir-60 C32D5.13 Caenorhabditis elegans
WBGene00003273 mir-45 ZK930.11 Caenorhabditis elegans
WBGene00003270 mir-42 ZK930.8 Caenorhabditis elegans
WBGene00003272 mir-44 ZK930.10 Caenorhabditis elegans
WBGene00003327 mir-234 C13B4.3 Caenorhabditis elegans
WBGene00003324 mir-231 R13A5.14 Caenorhabditis elegans
WBGene00003311 mir-83 C06A6.6 Caenorhabditis elegans
WBGene00003341 mir-247 C39E6.7 Caenorhabditis elegans
WBGene00045358 mir-797 C39E6.8 Caenorhabditis elegans
WBGene00003323 mir-230 F46G11.5 Caenorhabditis elegans
WBGene00045350 mir-788 T01B10.6 Caenorhabditis elegans

3 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule