WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00099069 Phenotype Remark  Authors state the absence of the socket cells causes a failure of phasmid staining (Pdy, phasmid dye-filling defect, also known as Dyf), and thus serves as a test for disrupted T-seam-cell polarity.
Remark  Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003623 nhr-25 F11C1.6 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F11C1.6a F11C1.6a 1719   X: 13008892-13009008
CDS:F11C1.6b F11C1.6b 1479   X: 13009481-13009499

1 Laboratories

Primary Identifier
HL

1 Phenotype

Identifier Name Description
WBPhenotype:0002211 phasmid neuron dye filling defect Animals exhibit defects in dye-filling of the neuronal cells of the phasmid sensilla. In C. elegans, these neurons are commonly assayed by dye-filling with FITC, DiI or DiO.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00035069

0 Strain