WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00095723 Remark  (Table S1) T10C6.11 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation. If Ahringer clone not available, Vidal laboratory clone used for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

7 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001878 his-4 T10C6.11 Caenorhabditis elegans
WBGene00001882 his-8 F45F2.12 Caenorhabditis elegans
WBGene00001894 his-20 K06C4.4 Caenorhabditis elegans
WBGene00001896 his-22 K06C4.12 Caenorhabditis elegans
WBGene00001913 his-39 F45F2.2 Caenorhabditis elegans
WBGene00001926 his-52 F07B7.4 Caenorhabditis elegans
WBGene00001928 his-54 F07B7.11 Caenorhabditis elegans

7 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F45F2.2 F45F2.2 204   V: 8536513-8536716
CDS:F07B7.11 F07B7.11 372   V: 8853006-8853377
CDS:K06C4.12 K06C4.12 372   V: 8892559-8892930
CDS:F07B7.4 F07B7.4 372   V: 8850464-8850835
CDS:F45F2.12 F45F2.12 372   V: 8532715-8533086
CDS:K06C4.4 K06C4.4 372   V: 8895101-8895472
CDS:T10C6.11 T10C6.11 372   V: 16040144-16040515

1 Laboratories

Primary Identifier
GR

2 Phenotype

Identifier Name Description
WBPhenotype:0000031 slow growth Any variation that causes a reduction in growth rate compared to control.
WBPhenotype:0000402 avoids bacterial lawn Lawn avoidance refers to behavior in which animals initially enter the bacterial lawn but later exit and remain near the edge of the bacteria. Lawn avoidance is often a response to bacterial food, that is pathogenic or low quality to the animal.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00040984

0 Strain