WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F54A5.3a Sequence Name  F54A5.3a
Length (nt)  951   Chromosome Location  I: 969680-969838
Chromosome . Primary Identifier  I Chromosome Location . Start  969680
Chromosome Location . End  969838
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54A5.3a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE30804 SHC-1, isoform a 35.2 316 Caenorhabditis elegans
 

Other

8 RNAi

WormBase ID
WBRNAi00007492
WBRNAi00048215
WBRNAi00109620
WBRNAi00032732
WBRNAi00109232
WBRNAi00109329
WBRNAi00109523
WBRNAi00109426

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F54A5.3a 969680 969838 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018788 shc-1 F54A5.3 Caenorhabditis elegans

6 Locations


Feature . Primary Identifier
Start End Strand
CDS:F54A5.3a 969680 969838 -1
CDS:F54A5.3a 969893 969983 -1
CDS:F54A5.3a 971460 971950 -1
CDS:F54A5.3a 972648 972720 -1
CDS:F54A5.3a 972867 972937 -1
CDS:F54A5.3a 972987 973052 -1

1 Sequence

Length
951

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F54A5.3a.1 F54A5.3a.1 1624   I: 969088-973133