WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71F9B.5a.2 Sequence Name  Y71F9B.5a.2
Length (nt)  2198   Chromosome Location  I: 2706883-2717549
Chromosome . Primary Identifier  I Chromosome Location . Start  2706883
Chromosome Location . End  2717549 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71F9B.5a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003006 lin-17 Y71F9B.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71F9B.5a Y71F9B.5a 1677   I: 2707629-2707694

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9B.5a.2 2706883 2717549 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5074   297   I: 2706883-2707179 Caenorhabditis elegans
Exon5076   96   I: 2707599-2707694 Caenorhabditis elegans
Exon5079   105   I: 2708102-2708206 Caenorhabditis elegans
Exon5083   147   I: 2709920-2710066 Caenorhabditis elegans
Exon5087   285   I: 2711121-2711405 Caenorhabditis elegans
Exon5092   110   I: 2712439-2712548 Caenorhabditis elegans
Exon5097   222   I: 2713851-2714072 Caenorhabditis elegans
Exon5102   289   I: 2714120-2714408 Caenorhabditis elegans
Exon5107   327   I: 2714728-2715054 Caenorhabditis elegans
Exon5114   320   I: 2717230-2717549 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9B.5a.2 2706883 2717549 1

1 Sequence

Length
2198

1 Sequence Ontology Term

Identifier Name Description
transcript