WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y71F9B.10a Sequence Name  Y71F9B.10a
Length (nt)  4428   Chromosome Location  I: 2761318-2761513
Chromosome . Primary Identifier  I Chromosome Location . Start  2761318
Chromosome Location . End  2761513
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71F9B.10a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE28808 SOP-3, isoform a 164.5 1475 Caenorhabditis elegans
 

Other

28 RNAi

WormBase ID
WBRNAi00064589
WBRNAi00058174
WBRNAi00064759
WBRNAi00004794
WBRNAi00004803
WBRNAi00004806
WBRNAi00004807
WBRNAi00004812
WBRNAi00087231
WBRNAi00037777
WBRNAi00086353
WBRNAi00086357
WBRNAi00086350
WBRNAi00086354
WBRNAi00070902
WBRNAi00075710
WBRNAi00086352
WBRNAi00086356
WBRNAi00075711
WBRNAi00075714
WBRNAi00075715
WBRNAi00084380
WBRNAi00084402
WBRNAi00075713
WBRNAi00075712
WBRNAi00070903
WBRNAi00085234
WBRNAi00117642

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y71F9B.10a 2761318 2761513 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004946 sop-3 Y71F9B.10 Caenorhabditis elegans

14 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y71F9B.10a 2761318 2761513 -1
CDS:Y71F9B.10a 2762147 2762392 -1
CDS:Y71F9B.10a 2763442 2764398 -1
CDS:Y71F9B.10a 2765092 2765677 -1
CDS:Y71F9B.10a 2765738 2765896 -1
CDS:Y71F9B.10a 2767170 2767829 -1
CDS:Y71F9B.10a 2768648 2768871 -1
CDS:Y71F9B.10a 2769761 2769872 -1
CDS:Y71F9B.10a 2770801 2771370 -1
CDS:Y71F9B.10a 2772770 2772984 -1
CDS:Y71F9B.10a 2775424 2775566 -1
CDS:Y71F9B.10a 2775614 2775701 -1
CDS:Y71F9B.10a 2775761 2775894 -1
CDS:Y71F9B.10a 2775945 2776082 -1

1 Sequence

Length
4428

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y71F9B.10a.1 Y71F9B.10a.1 4603   I: 2761158-2776097