WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F55F8.1 Sequence Name  F55F8.1
Length (nt)  2703   Chromosome Location  I: 5662286-5662483
Chromosome . Primary Identifier  I Chromosome Location . Start  5662286
Chromosome Location . End  5662483
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F55F8.1

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE36938 PTR-10 100.4 900 Caenorhabditis elegans
 

Other

9 RNAi

WormBase ID
WBRNAi00001075
WBRNAi00048523
WBRNAi00076950
WBRNAi00076918
WBRNAi00077030
WBRNAi00003792
WBRNAi00086426
WBRNAi00086425
WBRNAi00092938

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F55F8.1 5662286 5662483 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004224 ptr-10 F55F8.1 Caenorhabditis elegans

15 Locations


Feature . Primary Identifier
Start End Strand
CDS:F55F8.1 5662286 5662483 1
CDS:F55F8.1 5662656 5662745 1
CDS:F55F8.1 5662793 5662888 1
CDS:F55F8.1 5662943 5663094 1
CDS:F55F8.1 5663235 5663388 1
CDS:F55F8.1 5663588 5663706 1
CDS:F55F8.1 5663757 5663872 1
CDS:F55F8.1 5663917 5664153 1
CDS:F55F8.1 5664287 5664656 1
CDS:F55F8.1 5665110 5665374 1
CDS:F55F8.1 5665419 5665529 1
CDS:F55F8.1 5665586 5665858 1
CDS:F55F8.1 5666088 5666391 1
CDS:F55F8.1 5666689 5666838 1
CDS:F55F8.1 5666896 5666963 1

1 Sequence

Length
2703

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F55F8.1.2 F55F8.1.2 2946   I: 5662143-5667160
Transcript:F55F8.1.1 F55F8.1.1 2810   I: 5662284-5667068