WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C04A2.7b.1 Sequence Name  C04A2.7b.1
Length (nt)  3046   Chromosome Location  II: 6854362-6858301
Chromosome . Primary Identifier  II Chromosome Location . Start  6854362
Chromosome Location . End  6858301 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C04A2.7b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001023 dnj-5 C04A2.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C04A2.7b C04A2.7b 2550   II: 6854829-6854847

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C04A2.7b.1 6854362 6858301 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon54789   486   II: 6854362-6854847 Caenorhabditis elegans
Exon54790   71   II: 6854968-6855038 Caenorhabditis elegans
Exon54793   102   II: 6855253-6855354 Caenorhabditis elegans
Exon54797   168   II: 6855403-6855570 Caenorhabditis elegans
Exon54801   117   II: 6855617-6855733 Caenorhabditis elegans
Exon54805   452   II: 6855785-6856236 Caenorhabditis elegans
Exon54809   183   II: 6856283-6856465 Caenorhabditis elegans
Exon54813   367   II: 6856509-6856875 Caenorhabditis elegans
Exon54817   236   II: 6856962-6857197 Caenorhabditis elegans
Exon54821   211   II: 6857250-6857460 Caenorhabditis elegans
Exon54826   147   II: 6857506-6857652 Caenorhabditis elegans
Exon54829   168   II: 6857702-6857869 Caenorhabditis elegans
Exon54833   203   II: 6857919-6858121 Caenorhabditis elegans
Exon54839   135   II: 6858167-6858301 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C04A2.7b.1 6854362 6858301 -1

1 Sequence

Length
3046

1 Sequence Ontology Term

Identifier Name Description
transcript