WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D8.1l.1 Sequence Name  C09D8.1l.1
Length (nt)  6743   Chromosome Location  II: 10975539-11012240
Chromosome . Primary Identifier  II Chromosome Location . Start  10975539
Chromosome Location . End  11012240 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D8.1l.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004215 ptp-3 C09D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D8.1l C09D8.1l 6285   II: 10975539-10975674

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1l.1 10975539 11012240 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon67516   136   II: 10975539-10975674 Caenorhabditis elegans
Exon67526   142   II: 10976186-10976327 Caenorhabditis elegans
Exon67532   241   II: 10976373-10976613 Caenorhabditis elegans
Exon67538   214   II: 10977017-10977230 Caenorhabditis elegans
Exon67552   135   II: 10983267-10983401 Caenorhabditis elegans
Exon67562   141   II: 10983794-10983934 Caenorhabditis elegans
Exon67572   124   II: 10983998-10984121 Caenorhabditis elegans
Exon67578   72   II: 10984202-10984273 Caenorhabditis elegans
Exon67587   85   II: 10984385-10984469 Caenorhabditis elegans
Exon67597   246   II: 10984517-10984762 Caenorhabditis elegans
Exon67607   142   II: 10985022-10985163 Caenorhabditis elegans
Exon67617   208   II: 10985213-10985420 Caenorhabditis elegans
Exon67627   71   II: 10985485-10985555 Caenorhabditis elegans
Exon67637   30   II: 10986071-10986100 Caenorhabditis elegans
Exon67658   50   II: 10993895-10993944 Caenorhabditis elegans
Exon67669   265   II: 10994145-10994409 Caenorhabditis elegans
Exon67680   213   II: 10995024-10995236 Caenorhabditis elegans
Exon67691   143   II: 10995310-10995452 Caenorhabditis elegans
Exon67702   111   II: 10996164-10996274 Caenorhabditis elegans
Exon67714   133   II: 10998998-10999130 Caenorhabditis elegans
Exon67730   86   II: 11006751-11006836 Caenorhabditis elegans
Exon67743   177   II: 11007016-11007192 Caenorhabditis elegans
Exon67758   516   II: 11007310-11007825 Caenorhabditis elegans
Exon67772   276   II: 11007889-11008164 Caenorhabditis elegans
Exon67786   99   II: 11009181-11009279 Caenorhabditis elegans
Exon67800   1619   II: 11009368-11010986 Caenorhabditis elegans
Exon67814   253   II: 11011040-11011292 Caenorhabditis elegans
Exon67828   246   II: 11011373-11011618 Caenorhabditis elegans
Exon67838   569   II: 11011672-11012240 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1l.1 10975539 11012240 1

1 Sequence

Length
6743

1 Sequence Ontology Term

Identifier Name Description
transcript