WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T17H7.4d Sequence Name  T17H7.4d
Length (nt)  3093   Chromosome Location  III: 732353-732532
Chromosome . Primary Identifier  III Chromosome Location . Start  732353
Chromosome Location . End  732532
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T17H7.4d

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE35016 PAT-12, isoform d 117.8 1030 Caenorhabditis elegans
 

Other

11 RNAi

WormBase ID
WBRNAi00053461
WBRNAi00053463
WBRNAi00009181
WBRNAi00024291
WBRNAi00006590
WBRNAi00035633
WBRNAi00062896
WBRNAi00007058
WBRNAi00062901
WBRNAi00077521
WBRNAi00026303

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T17H7.4d 732353 732532 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003936 pat-12 T17H7.4 Caenorhabditis elegans

8 Locations


Feature . Primary Identifier
Start End Strand
CDS:T17H7.4d 732353 732532 -1
CDS:T17H7.4d 732583 732888 -1
CDS:T17H7.4d 732940 733074 -1
CDS:T17H7.4d 733290 733388 -1
CDS:T17H7.4d 733435 735300 -1
CDS:T17H7.4d 735358 735627 -1
CDS:T17H7.4d 737594 737680 -1
CDS:T17H7.4d 738829 738978 -1

1 Sequence

Length
3093

1 Sequence Ontology Term

Identifier Name Description
CDS  

7 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T17H7.4d.1 T17H7.4d.1 5130   III: 727208-738978
Transcript:T17H7.4d.2 T17H7.4d.2 5135   III: 727296-738978
Transcript:T17H7.4d.3 T17H7.4d.3 4182   III: 728363-738978
Transcript:T17H7.4d.4 T17H7.4d.4 4041   III: 728363-738978
Transcript:T17H7.4d.5 T17H7.4d.5 3369   III: 730635-738978
Transcript:T17H7.4d.6 T17H7.4d.6 3438   III: 731931-738978
Transcript:T17H7.4d.7 T17H7.4d.7 3299   III: 732147-738978