WormMine: Gene WBGene00194856

• WormBase Gene ID: WBGene00194856
• Gene Name: K11D9.5
• Sequence Name: K11D9.5
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including etr-1; ogt-1; and cep-1 based on RNA-seq studies. Is affected by silicon dioxide nanoparticle and paraquat based on microarray and RNA-seq studies.
• Biotype: SO:0002182
• Genetic Position: :±
• Length (nt): 753

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00194856

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:K11D9.5	K11D9.5	306	III: 10814376-10815128

Other

0 CDSs

37 RNAi Result

• WBRNAi00095683
• WBRNAi00107771
• WBRNAi00107770
• WBRNAi00066907
• WBRNAi00066714
• WBRNAi00002592
• WBRNAi00008988
• WBRNAi00065134
• WBRNAi00050600
• WBRNAi00025952
• WBRNAi00030222
• WBRNAi00091094
• WBRNAi00071362
• WBRNAi00111147
• WBRNAi00092780
• WBRNAi00092797
• WBRNAi00106907
• WBRNAi00092778
• WBRNAi00110093
• WBRNAi00065151
• WBRNAi00065152
• WBRNAi00081159
• WBRNAi00095898
• WBRNAi00095975
• WBRNAi00096050
• WBRNAi00096127
• WBRNAi00096204
• WBRNAi00096281
• WBRNAi00096376
• WBRNAi00096459

14 Allele

• gk964518
• gk963887
• gk963083
• gk184899
• gk962936
• ok3768
• gk958903
• gk337635
• gk932105
• gk838776
• gk717918
• gk3383
• gk962935
• gk184898

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00194856
• Start: 10814376
• End: 10815128
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in N2 animals exposed to 0.1mM Paraquat from hatching to reaching adult stage.	DESeq2 version 1.22.2, p < 0.05	WBPaper00064716:paraquat_downregulated
	Genes that were not enriched in either spermatogenic fem-3(q96gf) nor oogenic fog-2(q71) gonads, according to RNAseq analysis.	To identify differentially expressed transcripts, authors used R/Bioconductor package DESeq.	WBPaper00045521:Gender_Neutral
	Transcripts that showed significantly increased expression in animals after 24 hour exposure to 100ug per ml silica nanoparticles (SiNPs).	The random variance model (RVM)t-test was applied toidentify differentially expressed mRNAs and miRNAsbetween the SiNPs-treated group and the control group. P-value <0.05 and fold change (FC) >1.5 were considered as the threshold screening between the SiNP-treated groupand the control group.	WBPaper00060100:SiNP_upregulated_mRNA
	Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
	Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2.	Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1.	WBPaper00053810:daf-2(e1370)_downregulated
	Transcripts of noncoding genes that showed significantly increased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_enriched_noncoding-RNA
	ncRNAs with significantly decreased expression in cep-1(gk138) than in N2 after UV irradiation, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_downregulated_UV

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00194856
• Start: 10814376
• End: 10815128
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 753

1 Sequence Ontology Term