WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F48E3.1.1 Sequence Name  F48E3.1.1
Length (nt)  2179   Chromosome Location  X: 7485864-7490707
Chromosome . Primary Identifier  X Chromosome Location . Start  7485864
Chromosome Location . End  7490707 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48E3.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001637 gly-12 F48E3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F48E3.1 F48E3.1 1404   X: 7486172-7486294

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F48E3.1.1 7485864 7490707 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon239588   431   X: 7485864-7486294 Caenorhabditis elegans
Exon239591   63   X: 7486347-7486409 Caenorhabditis elegans
Exon239594   95   X: 7486479-7486573 Caenorhabditis elegans
Exon239597   118   X: 7486625-7486742 Caenorhabditis elegans
Exon239600   118   X: 7486792-7486909 Caenorhabditis elegans
Exon239603   79   X: 7486973-7487051 Caenorhabditis elegans
Exon239606   264   X: 7487627-7487890 Caenorhabditis elegans
Exon239609   124   X: 7488056-7488179 Caenorhabditis elegans
Exon239612   59   X: 7488228-7488286 Caenorhabditis elegans
Exon239615   70   X: 7488327-7488396 Caenorhabditis elegans
Exon239618   185   X: 7488440-7488624 Caenorhabditis elegans
Exon239621   119   X: 7488670-7488788 Caenorhabditis elegans
Exon239624   72   X: 7489675-7489746 Caenorhabditis elegans
Exon239627   382   X: 7490326-7490707 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F48E3.1.1 7485864 7490707 1

1 Sequence

Length
2179

1 Sequence Ontology Term

Identifier Name Description
transcript