WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F11C1.5a.1 Sequence Name  F11C1.5a.1
Length (nt)  5499   Chromosome Location  X: 12991476-12999632
Chromosome . Primary Identifier  X Chromosome Location . Start  12991476
Chromosome Location . End  12999632 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F11C1.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008694 vwa-8 F11C1.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F11C1.5a F11C1.5a 5415   X: 12991499-12991559

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F11C1.5a.1 12991476 12999632 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon256620   84   X: 12991476-12991559 Caenorhabditis elegans
Exon256622   230   X: 12991607-12991836 Caenorhabditis elegans
Exon256625   111   X: 12992168-12992278 Caenorhabditis elegans
Exon256628   486   X: 12992326-12992811 Caenorhabditis elegans
Exon256631   117   X: 12992891-12993007 Caenorhabditis elegans
Exon256634   569   X: 12993055-12993623 Caenorhabditis elegans
Exon256637   238   X: 12994048-12994285 Caenorhabditis elegans
Exon256640   443   X: 12994341-12994783 Caenorhabditis elegans
Exon256643   100   X: 12994828-12994927 Caenorhabditis elegans
Exon256646   217   X: 12995080-12995296 Caenorhabditis elegans
Exon256649   230   X: 12995344-12995573 Caenorhabditis elegans
Exon256652   118   X: 12995627-12995744 Caenorhabditis elegans
Exon256655   353   X: 12995856-12996208 Caenorhabditis elegans
Exon256657   111   X: 12996555-12996665 Caenorhabditis elegans
Exon256659   88   X: 12996709-12996796 Caenorhabditis elegans
Exon256661   70   X: 12996841-12996910 Caenorhabditis elegans
Exon256663   127   X: 12996955-12997081 Caenorhabditis elegans
Exon256665   159   X: 12997131-12997289 Caenorhabditis elegans
Exon256667   181   X: 12997340-12997520 Caenorhabditis elegans
Exon256669   106   X: 12997741-12997846 Caenorhabditis elegans
Exon256671   246   X: 12997891-12998136 Caenorhabditis elegans
Exon256673   220   X: 12998184-12998403 Caenorhabditis elegans
Exon256675   102   X: 12998448-12998549 Caenorhabditis elegans
Exon256677   101   X: 12998595-12998695 Caenorhabditis elegans
Exon256679   184   X: 12998746-12998929 Caenorhabditis elegans
Exon256681   120   X: 12999013-12999132 Caenorhabditis elegans
Exon256683   122   X: 12999184-12999305 Caenorhabditis elegans
Exon256685   266   X: 12999367-12999632 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F11C1.5a.1 12991476 12999632 1

1 Sequence

Length
5499

1 Sequence Ontology Term

Identifier Name Description
transcript