WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Expression of itx-1prom::gfp was observed in the intestinal tract of embryos from 1.5-fold stage throughout post-embryonic larval development and adulthood. Furthermore, GFP could be detected in socket cells ensheathing the inner and outer labial neurons. Expression could also be observed in the spermatheca and vulva muscle cells. No other cell type displays consistent reporter gene expression. Primary Identifier  Expr9160
Remark  Picture: Fig. 3.

17 Anatomy Terms

Definition Name Synonym Primary Identifier
an accordion-like tube that contains sperm and is the site of oocyte fertilization. spermatheca   WBbt:0005319
A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages. intestine gut WBbt:0005772
muscle associated with hermaphrodite vulva. vulval muscle   WBbt:0005821
Inner labial socket ILsoDL lineage name: ABplaapaaap WBbt:0004521
Quadrant outer labial socket OLQsoDL lineage name: ABarpaaaaal WBbt:0004426
Inner labial socket ILsoDR lineage name: ABpraapaaap WBbt:0004519
Quadrant outer labial socket OLQsoDR lineage name: ABarpaaaaar WBbt:0004425
Inner labial socket ILsoL lineage name: ABalaaapall WBbt:0004518
Quadrant outer labial socket OLQsoVL lineage name: ABalppaaapp WBbt:0004424
Inner labial socket ILsoR lineage name: ABalaaapprr WBbt:0004517
Quadrant outer labial socket OLQsoVR lineage name: ABalaappapp WBbt:0004423
Inner labial socket ILsoVL lineage name: ABalppapapp WBbt:0004503
Inner labial socket ILsoVR lineage name: ABarapppapp WBbt:0004501
Lateral outer labial sheath OLLshL lineage name: ABalpppaapd WBbt:0004443
Lateral outer labial sheath OLLshR lineage name: ABpraaaaapd WBbt:0004442
Lateral outer labial socket OLLsoL lineage name: ABalapaaapp WBbt:0004441
Lateral outer labial socket OLLsoR lineage name: ABalappappp WBbt:0004440

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002174 itx-1 W03D8.6 Caenorhabditis elegans

9 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024
  The C. elegans life stage spanning 620-800min(hatch) after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. A stage after elongation is over. The last stage of embryogenesis. Also called pre-hatched embryo, late embryo or morphogenetic embryo. fully-elongated embryo Ce WBls:0000021
  The C. elegans life stage spanning 460-520min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and double fold. A stage between 1.5-fold embryo and 3-fold embryo. 2-fold embryo Ce WBls:0000019
  The C. elegans life stage spanning 520-620min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and tripple fold. A stage between 2-fold embryo and fully-elongated embryo. Also called pretzel embryo or pretzel stage. 3-fold embryo Ce WBls:0000020
  The C. elegans life stage spanning 420-460min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and fold back 50%. A stage between comma embryo and 2-fold embryo. 1.5-fold embryo Ce WBls:0000018