WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Anatomy Term :

Definition  cells or anatomical parts specific to the hermaphrodite sex Name  hermaphrodite-specific anatomical entity
Primary Identifier  WBbt:0005758

17 Children

Definition Name Synonym Primary Identifier
an accordion-like tube that contains sperm and is the site of oocyte fertilization. spermatheca   WBbt:0005319
female genital. vulva   WBbt:0006748
muscle associated with hermaphrodite vulva. vulval muscle   WBbt:0005821
Neuron class of six motoneurons in the ventral cord, which innervate ventral body muscles and the vm2 muscles of the vulva. VC neuron   WBbt:0005304
a female haploid germ cell. oocyte ovum WBbt:0006797
muscle lining of the uterine wall. uterine muscle   WBbt:0005342
organ in hermaphrodite animal that produces both ova and sperm. hermaphrodite gonad ovotestis WBbt:0005178
Ventral Uterine precursor cell. ventral uterine precursor VU WBbt:0006780
Dorsal Uterine precursor cell. dorsal uterine precursor DU WBbt:0006781
Postembryonic coelomocyte in hermaphrodite ccDL lineage name: M.dlpa WBbt:0004564
Postembryonic coelomocyte in hermaphrodite ccDR lineage name: M.drpa WBbt:0004563
  adult seam cell left hermaphrodite   WBbt:0008137
seam syncytium on the right flank of an adult hermaphrodite. adult seam cell right hermaphrodite   WBbt:0008139
hyp7 syncytium in hermaphrodite. hyp7 syncytium hermaphrodite   WBbt:0008071
post-embryonic seam cells that make alae, hermaphrodite. hermaphrodite alae seam cell se_herm WBbt:0006913
AMsoL cell in hermaphrodite animal. AMsoL hermaphrodite   WBbt:0008619
AMsoR cell in hermaphrodite animal. AMsoR hermaphrodite   WBbt:0008621

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes that are enriched in hermaphrodite gonad according to RNAseq analysis towards FACS sorted Z1, Z4 and their daughter cells collected from L4 males and hermaphrodites. Cuffdiff v2.1.1 WBPaper00048690:gonad-hermaphrodite-biased
  Genes eniched in hermaphrodites by comparing tra-2(ar221ts);xol-1(y9) XX phenotype males (at 25C) with either N2 or xol-1(y9) XX hermaphrodites during L4 larva stage Student t-test. An mRNA was considered to have sex-enriched expression if it showed at least a two-fold enrichment within a 99% confidence interval (P < 0.01). WBPaper00026629:L4_hermaphrodite_enriched
  Transcripts enriched in N2 hermaphrodite animals, comparing to in male him-5(e1490) animals from L3 larva to young adult stages. DESeq FDR < 0.01. WBPaper00050231:hermaphrodite_enriched
  Genes eniched in hermaphrodites by comparing tra-2(ar221ts);xol-1(y9) XX phenotype males (at 25C) with either N2 or xol-1(y9) XX hermaphrodites during L2 larva stage Student t-test. An mRNA was considered to have sex-enriched expression if it showed at least a two-fold enrichment within a 99% confidence interval (P < 0.01). WBPaper00026629:L2_hermaphrodite_enriched
  Genes eniched in hermaphrodites by comparing tra-2(ar221ts);xol-1(y9) XX phenotype males (at 25C) with either N2 or xol-1(y9) XX hermaphrodites during L3 larva stage Student t-test. An mRNA was considered to have sex-enriched expression if it showed at least a two-fold enrichment within a 99% confidence interval (P < 0.01). WBPaper00026629:L3_hermaphrodite_enriched

0 Expression Patterns

0 Life Stages

2 Parents

Definition Name Synonym Primary Identifier
Multi-cellular organism that can produce both male and female gametes. hermaphrodite hermaphroditic organism WBbt:0007849
anatomical or cell objects that exist in only one, male or hermaphrodite, sex. Sex specific entity   WBbt:0005752