WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  scVI 0.6.0 Description  Single-cell RNA-Seq cell group 3_4 expressed in intestine.
Primary Identifier  WBPaper00065841:3_4

2 Anatomy Terms

Definition Name Synonym Primary Identifier
A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages. intestine gut WBbt:0005772
any of 20 large epithelial cells which form a tube and are mostly situated as bilaterally symmetric pairs around the tubular lumen. Each of these cell pairs forms an intestinal ring ( II-IX int rings). The most anterior intestinal ring (int ring I), however, is made of four cells. Intestinal cells contain large nuclei with large nucleoli and numerous autofluorescent granules in their cytoplasm. intestinal cell   WBbt:0005792

200 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000022 abt-4 Y39D8C.1 Caenorhabditis elegans
WBGene00000067 act-5 T25C8.2 Caenorhabditis elegans
WBGene00000214 asp-1 Y39B6A.20 Caenorhabditis elegans
WBGene00000215 asp-2 T18H9.2 Caenorhabditis elegans
WBGene00000216 asp-3 H22K11.1 Caenorhabditis elegans
WBGene00000218 asp-5 F21F8.3 Caenorhabditis elegans
WBGene00000219 asp-6 F21F8.7 Caenorhabditis elegans
WBGene00000522 clc-1 C09F12.1 Caenorhabditis elegans
WBGene00000652 col-76 M110.1 Caenorhabditis elegans
WBGene00000783 cpr-3 T10H4.12 Caenorhabditis elegans
WBGene00000786 cpr-6 C25B8.3 Caenorhabditis elegans
WBGene00001099 dsc-4 K02D7.4 Caenorhabditis elegans
WBGene00001330 eps-8 Y57G11C.24 Caenorhabditis elegans
WBGene00001501 ftn-2 D1037.3 Caenorhabditis elegans
WBGene00001770 gst-22 F21H7.1 Caenorhabditis elegans
WBGene00002021 hsp-17 F52E1.7 Caenorhabditis elegans
WBGene00002052 ifa-4 K05B2.3 Caenorhabditis elegans
WBGene00002054 ifb-2 F10C1.7 Caenorhabditis elegans
WBGene00002056 ifc-2 M6.1 Caenorhabditis elegans
WBGene00002058 ifd-2 F25E2.4 Caenorhabditis elegans
WBGene00002137 inx-15 R12E2.9 Caenorhabditis elegans
WBGene00002174 itx-1 W03D8.6 Caenorhabditis elegans
WBGene00002269 lec-6 Y55B1AR.1 Caenorhabditis elegans
WBGene00002271 lec-8 R07B1.10 Caenorhabditis elegans
WBGene00002272 lec-9 C16H3.2 Caenorhabditis elegans
WBGene00002273 lec-10 W01A11.4 Caenorhabditis elegans
WBGene00002274 lec-11 F38A5.3 Caenorhabditis elegans
WBGene00003091 lys-2 Y22F5A.5 Caenorhabditis elegans
WBGene00003092 lys-3 Y22F5A.6 Caenorhabditis elegans
WBGene00003093 lys-4 F58B3.1 Caenorhabditis elegans

6 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064
  At 20 Centigrade: 72-96 hours after L4-adult molt. 6-7 days after first cleavage. 3-days post-L4 adult hermaphrodite Ce WBls:0000066
  At 20 Centigrade: 5-6 days after L4-adult molt. 8-9 days after first cleavage. 5-days post-L4 adult hermaphrodite Ce WBls:0000068
  At 20 Centigrade: 8-9 days after L4-adult molt. 11-12 days after first cleavage. 8-days post-L4 adult hermaphrodite Ce WBls:0000672
  At 20 Centigrade: 15-16 days after L4-adult molt. 18-19 days after first cleavage. 15-days post-L4 adult hermaphrodite Ce WBls:0000675
  At 20 Centigrade: 11-12 days after L4-adult molt. 14-15 days after first cleavage. 11-days post-L4 adult hermaphrodite Ce WBls:0000797

0 Processes

0 Regulated By Gene

0 Regulated By Molecule