WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Description  Genes with no change in hcf-1(-), no change in sir-2.1(O/E) and upregulated in daf-2(-).
Primary Identifier  WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up

0 Anatomy Terms

911 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000028 abu-5 Y105C5A.4 Caenorhabditis elegans
WBGene00000035 ace-1 W09B12.1 Caenorhabditis elegans
WBGene00000051 acr-12 R01E6.4 Caenorhabditis elegans
WBGene00000066 act-4 M03F4.2 Caenorhabditis elegans
WBGene00000083 adt-2 F08C6.1 Caenorhabditis elegans
WBGene00000115 alh-9 F01F1.6 Caenorhabditis elegans
WBGene00000118 alh-12 Y69F12A.2 Caenorhabditis elegans
WBGene00000217 asp-4 R12H7.2 Caenorhabditis elegans
WBGene00000219 asp-6 F21F8.7 Caenorhabditis elegans
WBGene00000221 atf-4 T04C10.4 Caenorhabditis elegans
WBGene00000228 atn-1 W04D2.1 Caenorhabditis elegans
WBGene00000233 avr-15 R11G10.1 Caenorhabditis elegans
WBGene00000237 bam-2 Y71F9AR.1 Caenorhabditis elegans
WBGene00000240 pah-1 K08F8.4 Caenorhabditis elegans
WBGene00000246 bcc-1 M7.3 Caenorhabditis elegans
WBGene00000251 bli-1 C09G5.6 Caenorhabditis elegans
WBGene00000252 bli-2 F59E12.12 Caenorhabditis elegans
WBGene00000253 bli-3 F56C11.1 Caenorhabditis elegans
WBGene00000256 bli-6 Y73B6BL.34 Caenorhabditis elegans
WBGene00000273 brp-1 Y79H2A.1 Caenorhabditis elegans
WBGene00000277 cab-1 C23H4.1 Caenorhabditis elegans
WBGene00000285 cal-1 C13C12.1 Caenorhabditis elegans
WBGene00000286 cal-2 C18E9.1 Caenorhabditis elegans
WBGene00000367 cca-1 C54D2.5 Caenorhabditis elegans
WBGene00000441 ceh-18 ZC64.3 Caenorhabditis elegans
WBGene00000523 clc-2 C01C10.1 Caenorhabditis elegans
WBGene00000526 clc-5 C01C10.4 Caenorhabditis elegans
WBGene00000531 clh-4 T06F4.2 Caenorhabditis elegans
WBGene00000545 clp-4 Y39A3CL.5 Caenorhabditis elegans
WBGene00000603 col-14 C46A5.3 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000898 daf-2 Y55D5A.5 Caenorhabditis elegans

0 Regulated By Molecule