WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Hide

Oops!

http://intermine.wormbase.org/tools/wormmine/service/ is incorrect

Expression Cluster :

Algorithm  Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. Description  Top 300 transcripts enriched in DA1, DA2, DA3, DA4, DA5, DA6, DA7, DA8, DA9, DB1, DB2, DB3, DB4, DB5, DB6, DB7 according to single cell RNAseq.
Primary Identifier  WBPaper00061340:DA_DB

16 Anatomy Terms

Definition Name Synonym Primary Identifier
Ventral cord motor neurons, innervate dorsal muscles DB4 lineage name: ABprpappapp WBbt:0004843
Ventral cord motor neurons, innervate dorsal muscles DA2 lineage name: ABplppapapa WBbt:0004869
Ventral cord motor neurons, innervate dorsal muscles DB5 lineage name: ABplpapappp WBbt:0004842
Ventral cord motor neurons, innervate dorsal muscles DB6 lineage name: ABplppaappp WBbt:0004841
Ventral cord motor neurons, innervate dorsal muscles DB7 lineage name: ABprppaappp WBbt:0004840
Ventral cord motor neurons, innervate dorsal muscles DA7 lineage name: ABprpppaaap WBbt:0004859
Ventral cord motor neurons, innervate dorsal muscles DB3 lineage name: ABprpaaaapp WBbt:0004844
Ventral cord motor neurons, innervate dorsal muscles DA3 lineage name: ABprppapapa WBbt:0004867
Ventral cord motor neurons, innervate dorsal muscles DA4 lineage name: ABplppapapp WBbt:0004865
Ventral cord motor neurons, innervate dorsal muscles DA5 lineage name: ABprppapapp WBbt:0004863
Ventral cord motor neurons, innervate dorsal muscles DA6 lineage name: ABplpppaaap WBbt:0004861
Ventral cord motor neurons, innervate dorsal muscles DA9 lineage name: ABplpppaaaa WBbt:0004857
Ventral cord motor neurons, innervate dorsal muscles DA1 lineage name: ABprppapaap WBbt:0004871
Ventral cord motor neurons, innervate dorsal muscles DB2 lineage name: ABarappappa WBbt:0004845
Ventral cord motor neurons, innervate dorsal muscles DB1 lineage name: ABplpaaaapp WBbt:0004846
Ventral cord motor neurons, innervate dorsal muscles DA8 lineage name: ABprpapappp WBbt:0004858

300 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000042 acr-2 K11G12.2 Caenorhabditis elegans
WBGene00000048 acr-9 C40C9.2 Caenorhabditis elegans
WBGene00000051 acr-12 R01E6.4 Caenorhabditis elegans
WBGene00000053 acr-14 T05C12.2 Caenorhabditis elegans
WBGene00000086 aex-3 C02H7.3 Caenorhabditis elegans
WBGene00000238 bar-1 C54D1.6 Caenorhabditis elegans
WBGene00000284 cah-6 T28F2.3 Caenorhabditis elegans
WBGene00000481 cha-1 ZC416.8 Caenorhabditis elegans
WBGene00000527 cle-1 C36B1.1 Caenorhabditis elegans
WBGene00000952 del-1 E02H4.1 Caenorhabditis elegans
WBGene00001189 egl-21 F01D4.4 Caenorhabditis elegans
WBGene00001368 exc-7 F35H8.5 Caenorhabditis elegans
WBGene00001385 far-1 F02A9.2 Caenorhabditis elegans
WBGene00001386 far-2 F02A9.3 Caenorhabditis elegans
WBGene00001410 feh-1 Y54F10AM.2 Caenorhabditis elegans
WBGene00001454 flp-11 K02G10.4 Caenorhabditis elegans
WBGene00001461 flp-18 Y48D7A.2 Caenorhabditis elegans
WBGene00001488 frm-1 ZK270.2 Caenorhabditis elegans
WBGene00001490 frm-3 H05G16.1 Caenorhabditis elegans
WBGene00001496 frm-10 F25H9.5 Caenorhabditis elegans
WBGene00001512 gab-1 ZC482.1 Caenorhabditis elegans
WBGene00001519 gar-3 Y40H4A.1 Caenorhabditis elegans
WBGene00001616 glr-5 ZC196.7 Caenorhabditis elegans
WBGene00001682 gpc-2 F08B6.2 Caenorhabditis elegans
WBGene00001961 hlh-17 F38C2.2 Caenorhabditis elegans
WBGene00001986 hot-1 F43D2.4 Caenorhabditis elegans
WBGene00001987 hot-2 Y39B6A.48 Caenorhabditis elegans
WBGene00002048 ida-1 B0244.2 Caenorhabditis elegans
WBGene00002175 jac-1 Y105C5B.21 Caenorhabditis elegans
WBGene00002177 jkk-1 F35C8.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027

0 Processes

0 Regulated By Gene

0 Regulated By Molecule