WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differentially expressed miRNAs were identified using DEGseq based on unique molecular identifier (UMI). A minimum UMI sum of 10 in 3 replicates was set as the threshold of expression. MiRNAs with more than five reads were defined as expressed. Differential expression of miRNAs was analysed by t-test (P value < 0.05 and fold-change > 1.5 or < 0.67) after Box-Cox transformation. MiRNA targets were identified by TargetScanWorm (Release 6.2) and Pearson Correlation Coefficient smaller than -0.2. Description  Micro RNAs that showed significantly decreased expression in day 8 adults comparing to in day 1 adults in hypodermis.
Primary Identifier  WBPaper00066447:Day8_vs_Day1_downregulated_hypodermis

1 Anatomy Terms

Definition Name Synonym Primary Identifier
Epidermal layer. hypodermis epidermis WBbt:0005733

14 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002285 let-7 C05G5.6 Caenorhabditis elegans
WBGene00003289 mir-61 F55A11.9 Caenorhabditis elegans
WBGene00003299 mir-71 F16A11.4 Caenorhabditis elegans
WBGene00003335 mir-241 F56A12.4 Caenorhabditis elegans
WBGene00003278 mir-50 Y71G12B.29 Caenorhabditis elegans
WBGene00003281 mir-53 F36H1.8 Caenorhabditis elegans
WBGene00003347 mir-253 F44E7.11 Caenorhabditis elegans
WBGene00003301 mir-73 T24D8.9 Caenorhabditis elegans
WBGene00003309 mir-81 T07D1.6 Caenorhabditis elegans
WBGene00003323 mir-230 F46G11.5 Caenorhabditis elegans
WBGene00003330 mir-237 F22F1.4 Caenorhabditis elegans
WBGene00003326 mir-233 W03G11.5 Caenorhabditis elegans
WBGene00003282 mir-54 F09A5.5 Caenorhabditis elegans
WBGene00003275 mir-47 K02B9.5 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064
  At 20 Centigrade: 8-9 days after L4-adult molt. 11-12 days after first cleavage. 8-days post-L4 adult hermaphrodite Ce WBls:0000672

0 Processes

0 Regulated By Gene

0 Regulated By Molecule