WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively. Description  miRNA with increased expression in N2 1-day post L4 adult hermaphrodite comparing to in N2 L4 larva.
Primary Identifier  WBPaper00045316:miRNA_N2_adult_vs_L4_upregulated_adult

0 Anatomy Terms

48 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003262 mir-34 Y41G9A.7 Caenorhabditis elegans
WBGene00003263 mir-35 Y62F5A.2 Caenorhabditis elegans
WBGene00003264 mir-36 Y62F5A.3 Caenorhabditis elegans
WBGene00003265 mir-37 Y62F5A.4 Caenorhabditis elegans
WBGene00003289 mir-61 F55A11.9 Caenorhabditis elegans
WBGene00003299 mir-71 F16A11.4 Caenorhabditis elegans
WBGene00003260 mir-1 T09B4.11 Caenorhabditis elegans
WBGene00077708 mir-1817 Y37F4.9 Caenorhabditis elegans
WBGene00077709 mir-1822 ZK84.8 Caenorhabditis elegans
WBGene00003288 mir-60 C32D5.13 Caenorhabditis elegans
WBGene00003266 mir-38 Y62F5A.5 Caenorhabditis elegans
WBGene00003267 mir-39 Y62F5A.6 Caenorhabditis elegans
WBGene00003268 mir-40 Y62F5A.7 Caenorhabditis elegans
WBGene00003269 mir-41 Y62F5A.8 Caenorhabditis elegans
WBGene00014534 mir-355 T27D12.5 Caenorhabditis elegans
WBGene00003273 mir-45 ZK930.11 Caenorhabditis elegans
WBGene00003270 mir-42 ZK930.8 Caenorhabditis elegans
WBGene00003272 mir-44 ZK930.10 Caenorhabditis elegans
WBGene00003305 mir-77 T21B4.13 Caenorhabditis elegans
WBGene00003292 mir-64 Y48G9A.13 Caenorhabditis elegans
WBGene00003293 mir-65 Y48G9A.14 Caenorhabditis elegans
WBGene00219264 mir-4936 Y53G8AL.5 Caenorhabditis elegans
WBGene00195236 mir-356.2 ZK652.13 Caenorhabditis elegans
WBGene00003318 mir-90 K01F9.1 Caenorhabditis elegans
WBGene00003314 mir-86 Y56A3A.34 Caenorhabditis elegans
WBGene00003274 mir-46 ZK525.3 Caenorhabditis elegans
WBGene00077722 mir-58.2 Y73B6A.7 Caenorhabditis elegans
WBGene00077726 mir-1820 C46A5.10 Caenorhabditis elegans
WBGene00003311 mir-83 C06A6.6 Caenorhabditis elegans
WBGene00219221 mir-5551 C28D4.16 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule