WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively. Description  miRNA with increased expression in N2 L4 larva comparing to in N2 L3 larva.
Primary Identifier  WBPaper00045316:miRNA_N2_L4_vs_L3_upregulated_adult

0 Anatomy Terms

25 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003039 mir-48 F56A12.3 Caenorhabditis elegans
WBGene00003262 mir-34 Y41G9A.7 Caenorhabditis elegans
WBGene00003328 mir-235 T09B4.12 Caenorhabditis elegans
WBGene00003313 mir-85 F49E12.11 Caenorhabditis elegans
WBGene00003268 mir-40 Y62F5A.7 Caenorhabditis elegans
WBGene00003269 mir-41 Y62F5A.8 Caenorhabditis elegans
WBGene00003305 mir-77 T21B4.13 Caenorhabditis elegans
WBGene00194828 mir-2214 B0361.12 Caenorhabditis elegans
WBGene00003337 mir-243 R08C7.14 Caenorhabditis elegans
WBGene00077722 mir-58.2 Y73B6A.7 Caenorhabditis elegans
WBGene00003340 mir-246 ZK593.10 Caenorhabditis elegans
WBGene00003287 mir-59 B0035.17 Caenorhabditis elegans
WBGene00045330 mir-798 Y64G10A.14 Caenorhabditis elegans
WBGene00003306 mir-78 Y40H7A.12 Caenorhabditis elegans
WBGene00003347 mir-253 F44E7.11 Caenorhabditis elegans
WBGene00023454 mir-357 F25G6.10 Caenorhabditis elegans
WBGene00023455 mir-358 F25G6.11 Caenorhabditis elegans
WBGene00003309 mir-81 T07D1.6 Caenorhabditis elegans
WBGene00003310 mir-82 T07D1.7 Caenorhabditis elegans
WBGene00045342 mir-785 Y41G9A.11 Caenorhabditis elegans
WBGene00023456 mir-360 Y23B4A.3 Caenorhabditis elegans
WBGene00003334 mir-240 C39D10.10 Caenorhabditis elegans
WBGene00045343 mir-786 C39D10.12 Caenorhabditis elegans
WBGene00003333 mir-239.2 C34E11.6 Caenorhabditis elegans
WBGene00003332 mir-239.1 C34E11.5 Caenorhabditis elegans

3 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule